YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DEGS1_CHICK
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNTVAREDF EWVYTDQPHA DRRKEILAKH PEIKALMKPD YNLIWVVMLM VAAQLTAFYL  60
   61 VRDLDWKWVV FWAYVFGSCI SHSMTLAIHE ISHNSAFGNG RAMWNRWFGI FANLPLGLPY 120
  121 SISFKRYHMD HHRYLGGDGI DVDIPTNFEG WFFCTRFRKF IWIVLQPFFY AIRPLCINPK 180
  181 PITRLEIINL LAQLFFDIVI YYLWGAKSIF YMLAGSVLGL GLHPISGHFI AEHYMFLKGH 240
  241 ETYSYYGPLN LLTFNVGYHN EHHDFPNIPG KSLPLVKKIA AEYYDNLPQY NSWIKVLYDF 300
  301 VMDDTISPYS RMKRQLKGEV KQD

Type	Start	End	Confidence
Cytoplasmic	1	40	0.91
Transmembrane Helix	41	61	0.93
Non-Cytoplasmic	62	67	0.84
Transmembrane Helix	68	89	0.89
Cytoplasmic	90	102	0.81
Transmembrane Helix	103	124	0.86
Non-Cytoplasmic	125	157	0.82
Transmembrane Helix	158	177	0.69
Cytoplasmic	178	184	0.76
Transmembrane Helix	185	204	0.77
Non-Cytoplasmic	205	208	0.70
Transmembrane Helix	209	231	0.84
Cytoplasmic	232	323	0.89