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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50739002
Protein type: Transmembrane
Type Confidence: 0.60
Topology Confidence: 0.44
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHTVLHEIP AAPRAHSNTR PPQHDLRYGP LSAGPEKRRL TGQAPTSPKS YSRSIRAKRE  60
   61 PVFPTSTCCT RASLSPSRPA KRGVRRARPL LCGRARKPRS RALPEAARTA ARIGLQRPHA 120
  121 AMFALPCPAL CTPVPSALSS AGLFAQQGPQ GRGRSWPYSI MGFTSLLAIR EMLLWLCLDT 180
  181 CFFQDFCLLG ASQICIDNLF EVMTSKGLPA SSAQQQFTAL LSLAEIFSVR HSKYPTCLGT 240
  241 SVVTFRLNNW GYDKSVAMFA IGRTKSKASS VQVSGLLGDI GQTRLCSSRQ ESLPGPDSSC 300
  301 PEDLESMKPP ITTAALAIAS AKIWGIHTMV QQRYPKILLS DKGKLRRTVQ ELDLLSYAWV 360
  361 STQQLRRSHS AYGRQPSAKR QPREAAARPS GAAPRQPCEA VGRKGTRTRP AGRGTALCHT 420
  421 PSVSPGSSVI YQKIQNNSDV LKVTQKLASG RMTCVGTVCP RHIRLLQVLG AAYSWRVSFV 480
  481 LILTTAVPAR DTSLPSLHDT LQEHILLQES LAALSEQCRP PEWDGRLGVR GGWLPMVAAP 540
  541 EAQTAAPGPP SKATLVRHSG TLWSPELLFY ICLDEIAERR KMYRIVLVTV CQNSCAIWVT 600
  601 AARFFLPFLK GLSSPVPVPT LKLWRPDPIP LEAGATFTCD FDGFVQGCTS GAANGLFCGS 660
  661 GILHKESSID GSFDFVSFLT STVKLGCPTS ADVQCVPIAL AHWYRSGEAS LKYTDSVCLA 720
  721 LCVTTSVKEA DPSSRRGSLN GSKSGCDGAL IFQGSILSGL QFEHTQVPEF GCEGAVLWAA 780
  781 ARPASEPQLP AMAVYDDVPA DMVAEESGPG AQNSPYQLRR KTLLPKRTAC PTKNSMEGAS 840
  841 TSATENFGHR AKRARVSGKS QDLSAAPAEQ YLQEKLPDEV VLKIFSYLLE QDLCRAACVC 900
  901 KRFSELANDP ILWKRLYMEV FEYTRPMMHP EAGKFYQINP EEYEHPNPWK ESFQQLYKGA 960
  961 HVKPGFAEHF YSNPARYKGR ENMLYYDTIE DALGGVQEAH FDGLIFVHSG IYTDEWIYIE1020
 1021 SPITMIGAAP GKVADKVIIE NTRDSTFVFM EGSEDAYVGY MTIRFNPDDK SAQHHNAHHC1080
 1081 LEITVNCSPI IDHCIIRSTC TVGSAVCVSG QGACPTIKHC NISDCENVGL YITDHAQGIY1140
 1141 EDNEISNNAL AGIWVKNHGN PIIRRNHIHH GRDVGVFTFD HGMGYFESCN IHRNRIAGFE1200
 1201 VKAYANPTVV RCEIHHGQTG GIYVHEKGRG QFIENKIYAN NFAGVWITSN SDPTIRGNAI1260
 1261 FNGNQGGVYI FGDGRGLIEG NDIYGNALAG IQIRTNSCPI VRHNKIHDGQ HGGIYVHEKG1320
 1321 QGVIEENEVY SNTLAGVWVT TGSTPVLRRN RIHSGKQVGV YFYDNGHGVL EDNDIYNHMY1380
 1381 SGVQIRTGSN PKIRRNKIWG GQNGGILVYN SGLGFIEDNE IFDNAMAGVW IKTDSNPTLR1440
 1441 RNKIHDGRDG GICIFNGGRG LLEENDIFRN AQAGVLISTN SHPVLRKNRI FDGFAAGIEI1500
 1501 TNHATATLEG NQIFNNRFGG LFLASGVNVT MKDNKIMNNQ DAIEKAVSRG QCLYKISSYT1560
 1561 SYPMHDFYRC HTCNTTDRNA ICVNCIKKCH QGHDVEFIRH DRFFCDCGAG TLSNPCTLAG1620
 1621 EPTHDTDTLY DSAPPIESNT LQHN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle