YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ICMTB_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEIFSDTGF RQLTQMFLAI IFFHTSEYIL AIAIHGASKV TLSSLLISKH YALAMLISVL  60
   61 EYIAEIVFFP GLKQHWWISN FGLTMIILGE ILRKTAIITA GRSFTHLIKI RREEHHKLVT 120
  121 EGVYQIMRHP SYSGFLIWSV GTQVMLCNPI SAIAFAVVVW RFFAERIPYE EHYLKQFFGR 180
  181 QYVEYAQRVP SGVPFVN

Type	Start	End	Confidence
Cytoplasmic	1	12	0.44
Transmembrane Helix	13	37	0.80
Non-Cytoplasmic	38	46	0.37
Transmembrane Helix	47	69	0.80
Cytoplasmic	70	75	0.32
Transmembrane Helix	76	97	0.63
Non-Cytoplasmic	98	134	0.55
Transmembrane Helix	135	160	0.82
Cytoplasmic	161	197	0.58