YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BBD2_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSLQAPVVC PSVRPRQLGV SALLVNCSVS KTRSLRKQFW GNQTKNDKSQ AATVNLRLHL  60
   61 RRYKSIKCLF SSHSDGTGST AENFNENDED YVKSSVLEAV EVKSGPDGFM VKMKDGRQLR 120
  121 CVHNNPQGGN LPNYAPHSAI VLKMEDGTGL LLPIIVLEMP SVLLMAAMTN VQIARPTMYQ 180
  181 VVKDMVDKMG YEVRLVRVTT RVHEAYFAEL YLSKVGDKSD CVSFDLRPSD AINIAVRCKV 240
  241 PIQVNKYLAY SDGMRVIDSG KLSKQTPASD GLLFTELDRP NGQPCFDTKE FDLVRNMMQA 300
  301 VDEERYDEAA EWRDKLGKFQ AKRKLRKYT

Type	Start	End	Confidence
Signal Peptide	1	22	0.53
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	329	0.93