YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SERK4_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSSKMEQRS LLCFLYLLLL FNFTLRVAGN AEGDALTQLK NSLSSGDPAN NVLQSWDATL  60
   61 VTPCTWFHVT CNPENKVTRV DLGNAKLSGK LVPELGQLLN LQYLELYSNN ITGEIPEELG 120
  121 DLVELVSLDL YANSISGPIP SSLGKLGKLR FLRLNNNSLS GEIPMTLTSV QLQVLDISNN 180
  181 RLSGDIPVNG SFSLFTPISF ANNSLTDLPE PPPTSTSPTP PPPSGGQMTA AIAGGVAAGA 240
  241 ALLFAVPAIA FAWWLRRKPQ DHFFDVPAEE DPEVHLGQLK RFTLRELLVA TDNFSNKNVL 300
  301 GRGGFGKVYK GRLADGNLVA VKRLKEERTK GGELQFQTEV EMISMAVHRN LLRLRGFCMT 360
  361 PTERLLVYPY MANGSVASCL RERPEGNPAL DWPKRKHIAL GSARGLAYLH DHCDQKIIHR 420
  421 DVKAANILLD EEFEAVVGDF GLAKLMNYND SHVTTAVRGT IGHIAPEYLS TGKSSEKTDV 480
  481 FGYGVMLLEL ITGQKAFDLA RLANDDDIML LDWVKEVLKE KKLESLVDAE LEGKYVETEV 540
  541 EQLIQMALLC TQSSAMERPK MSEVVRMLEG DGLAERWEEW QKEEMPIHDF NYQAYPHAGT 600
  601 DWLIPYSNSL IENDYPSGPR

Type	Start	End	Confidence
Signal Peptide	1	31	0.95
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	229	0.98
Transmembrane Helix	230	254	0.86
Cytoplasmic	255	620	0.90