YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50737619
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEIHNPFPD HLSFTKRPER HDTLQVPAET CCPAGSSEAQ PAWPILCSFQ GRGHLAHFSN  60
   61 LTFRGNFGWD LGFQAQISVF PAPQDEVFKG LGLRNLIFAH SSSPSLTTAG IWGEQTPSST 120
  121 SGCTWLLMVW GGLNKQKTAI RLLLDVPASL CCGIQLLVFP QVTGIKEEGH SHRVRSIWDP 180
  181 QLILPPAACT LLPVSLLSVG SVASMDAPVQ IFREELDSTC MPGPCRPSST SSSWPLGWAD 240
  241 YDSNATGTFR DTQHNSTSIS PSIPIIITAV YSVVFVVGLV GNSLVMFVII RYTKMKTATN 300
  301 IYIFNLAMAD ALVTTTMPFQ STEYLMNSWP FGDVLCKIVI SIDYYNMFTS IFTLTMMSVD 360
  361 RYIAVCHPVK ALDFRTPLKA KIINICIWLL SSSVGISAIV LGGTKVREDT GSTECSLQFP 420
  421 DRDYVWWDIF MKICVFVFAF VIPVLIIIVC YTLMILRLKS VRLLSGSREK DRNLRRITRL 480
  481 VLVVVAVFII CWTPIHIFVL VEALGDVSHS TAAVSSYYFC IALGYTNSSL NPILYAFLDE 540
  541 NFKRCFKDFC FPFKMRMDRQ STSRVRNTVQ DPAYRREADG TNKPV

Type	Start	End	Confidence
Cytoplasmic	1	181	0.54
Transmembrane Helix	182	202	0.58
Non-Cytoplasmic	203	264	0.96
Transmembrane Helix	265	290	0.88
Cytoplasmic	291	300	0.84
Transmembrane Helix	301	320	0.91
Non-Cytoplasmic	321	343	0.80
Transmembrane Helix	344	364	0.78
Cytoplasmic	365	381	0.89
Transmembrane Helix	382	403	0.90
Non-Cytoplasmic	404	432	0.94
Transmembrane Helix	433	456	0.93
Cytoplasmic	457	476	0.95
Transmembrane Helix	477	499	0.93
Non-Cytoplasmic	500	513	0.81
Transmembrane Helix	514	537	0.71
Cytoplasmic	538	585	0.88