YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	EGY1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTLTSVAFA AAVNIRFRSF HRENIKTTIT TLPKWQKRLC FSSTEDSHRF RIAKCLGNDE  60
   61 NSNRDDSIGE NGETHKSSVV KTATFEEEDE ETSKSSSTTS SSNEFGSDKT SMPSTIDPTY 120
  121 SSFQIDSFKL MELLGPEKVD PADVKLIKDK LFGYSTFWVT KEEPFGDLGE GILFLGNLRG 180
  181 KKEDVFAKLQ RKLVEVASDK YNLFMIEEPN SEGPDPRGGA RVSFGLLRKE VSEPGPTTLW 240
  241 QYVIALILFL LTIGSSVELG IASQINRLPP EVVKYFTDPN AVEPPDMELL YPFVDAALPL 300
  301 AYGVLGILLF HELGHFLAAV PKKVKLSIPY FIPNITLGSF GAITQFKSIL PDRSTKVDIS 360
  361 LAGPFAGAAL SVSMFAVGLF LSTEPDAAND LVQVPSMLFQ GSLLLGLISR ATLGYAALHA 420
  421 ATVSIHPLVI AGWCGLTTTA FNMLPVGCLD GGRAVQGAFG KNALVTFGLS TYVMLGLRVL 480
  481 GGPLALPWGL YVLICQRTPE KPCLNDVTEV GTWRKALVGI ALILVVLTLL PVWDELAEEV 540
  541 GIGLVTTF

Type	Start	End	Confidence
Cytoplasmic	1	237	0.68
Transmembrane Helix	238	262	0.83
Non-Cytoplasmic	263	295	0.64
Transmembrane Helix	296	318	0.80
Cytoplasmic	319	358	0.42
Transmembrane Helix	359	382	0.88
Non-Cytoplasmic	383	395	0.47
Transmembrane Helix	396	418	0.77
Cytoplasmic	419	422	0.38
Transmembrane Helix	423	449	0.71
Non-Cytoplasmic	450	468	0.62
Transmembrane Helix	469	495	0.70
Cytoplasmic	496	511	0.69
Transmembrane Helix	512	533	0.85
Non-Cytoplasmic	534	548	0.67