YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CDS4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATFAELVLS TSRCTCPCRS FTRKPLIRPP LSGLRLPGDT KPLFRSGLGR ISVSRRFLTA  60
   61 VARAESDQLG DDDHSKGIDR IHNLQNVEDK QKKASQLKKR VIFGIGIGLP VGCVVLAGGW 120
  121 VFTVALASSV FIGSREYFEL VRSRGIAKGM TPPPRYVSRV CSVICALMPI LTLYFGNIDI 180
  181 LVTSAAFVVA IALLVQRGSP RFAQLSSTMF GLFYCGYLPS FWVKLRCGLA APALNTGIGR 240
  241 TWPILLGGQA HWTVGLVATL ISFSGVIATD TFAFLGGKTF GRTPLTSISP KKTWEGTIVG 300
  301 LVGCIAITIL LSKYLSWPQS LFSSVAFGFL NFFGSVFGDL TESMIKRDAG VKDSGSLIPG 360
  361 HGGILDRVDS YIFTGALAYS FIKTSLKLYG V

Type	Start	End	Confidence
Cytoplasmic	1	100	0.97
Transmembrane Helix	101	124	0.92
Non-Cytoplasmic	125	172	0.88
Transmembrane Helix	173	195	0.86
Cytoplasmic	196	204	0.75
Transmembrane Helix	205	223	0.80
Non-Cytoplasmic	224	251	0.79
Transmembrane Helix	252	275	0.91
Cytoplasmic	276	292	0.93
Transmembrane Helix	293	312	0.92
Non-Cytoplasmic	313	320	0.65
Transmembrane Helix	321	340	0.84
Cytoplasmic	341	391	0.85