YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50732788
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVYFSKTLN SSAYNHYHLA EECAVPKRDI FQVWPFFRNT MWHSFTVTQF SSKLKPGKCL  60
   61 LSSIAVAEVQ GSFHKHTQNI RMHSQRTTAV EVPPPFHVSI FNVSVYHTPL SNRQLILMTR 120
  121 SSCLQNAATF FLPPQSKVTR AFEYAEAPLI PSQGTPSKHP RGACVVTHLH CEGGTVKHKQ 180
  181 RFLWVIHISR TAGRNSASSS SLSSSFSPLL KARPGPHTPH RRGACPETLS GDASPPGPAS 240
  241 PPRGAGAAQS GAAAEPFPPP VRRPPSPLPP PRRWARGRPA GVGQPRSMEP PPPLEQPPRP 300
  301 RSHTVTTTSS SFTANLSASS STLAYDREFL RTPPGLLMVA EIILGLLVWT LIAGTEYFLY 360
  361 PAFGWVMFVA VFYWVLTVFF LIIYMTMTYT RIPQVPWTTV GLCFNGSAFI LYLIAAIVDA 420
  421 SSVTKELDSH NYNSWAASSF FAFVVTSCYA GNTYFSFISW QSRTLQ

Type	Start	End	Confidence
Cytoplasmic	1	334	0.64
Transmembrane Helix	335	353	0.95
Non-Cytoplasmic	354	362	0.70
Transmembrane Helix	363	385	0.90
Cytoplasmic	386	394	0.81
Transmembrane Helix	395	418	0.88
Non-Cytoplasmic	419	435	0.88
Transmembrane Helix	436	458	0.90
Cytoplasmic	459	466	0.90