YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CSTR3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	39	0.99
Transmembrane Helix	40	60	0.94
Non-Cytoplasmic	61	73	0.85
Transmembrane Helix	74	94	0.87
Cytoplasmic	95	114	0.80
Transmembrane Helix	115	131	0.69
Non-Cytoplasmic	132	145	0.54
Transmembrane Helix	146	163	0.66
Cytoplasmic	164	172	0.73
Transmembrane Helix	173	191	0.87
Non-Cytoplasmic	192	200	0.66
Transmembrane Helix	201	226	0.82
Cytoplasmic	227	242	0.76
Transmembrane Helix	243	264	0.90
Non-Cytoplasmic	265	278	0.77
Transmembrane Helix	279	300	0.83
Cytoplasmic	301	311	0.62
Transmembrane Helix	312	342	0.78
Non-Cytoplasmic	343	405	0.53

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNGIAECPA CHSKLVSPGS KTISRAYDDH KIRVSSKQRV LNVLLVVGDC MLVGLQPVLV  60
   61 YMSKVDGKFN FSPISVNFLT EIAKVIFAIV MLLIQARHQK VGEKPLLSVS TFVQAARNNV 120
  121 LLAVPALLYA INNYLKFTMQ LYFNPATVKM LSNLKVLVIA VLLKMVMKRR FSIIQWEALA 180
  181 LLLIGISVNQ LRSLPEGATA IGIPLATGAY VCTVIFVTVP SMASVFNEYA LKSQYDTSIY 240
  241 LQNLFLYGYG AIFNFLGILG TVIYKGPGSF DILQGHSRAT MFLILNNAAQ GILSSFFFKY 300
  301 ADTILKKYSS TVATIFTGIA SAALFGHVIT MNFLLGISIV FISMHQFFSP LAKARDEQQQ 360
  361 NGNLELGNTK DTHRANESFI NMAAGANEEA SHRGESDDRT PLLPR