YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50732495
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHTVAVKGS RTPALPGAVV PLGACTPAGV IFRINQAVMP PEIHVSAPSS GFIPSALGVS  60
   61 TRPTLARSLV PLMPGQLKAA GCRAVWRSPA GCCRPAPASG AAVRVPDPSL TGSSLRAPSP 120
  121 LTAPGTLLLA VPLARRRDMA AGRRLPLPAL LLPLACAALA PRGLTEKQRA CLLPPDDGPC 180
  181 RALVPRWYYD RYTQSCQEFS YGGCHGNANN FLSHDDCEKN CWTIKKVPKL CRMEADTGPC 240
  241 RGYIRRYAFN LSSMRCEEFI YGGCYGNGNN FKDLQSCVDH CLPEKTGPLL CYSPKDEGLC 300
  301 SSSVPRYYYD TTSKSCKEFK YTGCGGNANN FVTEVDCYNV CRKGSQKPTI NKSRSLLRRK 360
  361 MMRKLIKKPQ THNPKS

Type	Start	End	Confidence
Cytoplasmic	1	13	0.53
Transmembrane Helix	14	32	0.54
Non-Cytoplasmic	33	376	0.75