YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13877837
Protein type:	Transmembrane
Type Confidence:	0.61
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPISRRVLTP ITAAPVILAV LCFFFWSSII GPDNLKGTKH VLQDAKTIPL PVDGPESLEF  60
   61 DPQGEGPYVG VTDGRILKWR GEELGWVDFA YTSPHRDNCS SHEVVPSCGR PLGLSFERKT 120
  121 GDLYICDGYF GVMKVGPEGG LGELVVDEAE GRKVMFANQG DIDEEEDIFY FNDSSDTYHF 180
  181 RDVFYVSLSG TKVGRVIRYD MKKKEAKVIM DKLRLPNGLA LSKNGSFVVT CESSTNICHR 240
  241 IWVKGPKSGT NEVFATLPGS PDNIRRTPTG DFWVALHCKK NLFTRAVLIH TWVGRFFMNT 300
  301 MKMETVIHFM NGGKPHGIVV KLSGETGEIL EILEDSEGKT VKYVSEAYET KDGKLWIGSV 360
  361 YWPAVWVLDT SVYDSI

Type	Start	End	Confidence
Cytoplasmic	1	6	0.58
Transmembrane Helix	7	28	0.55
Non-Cytoplasmic	29	376	0.97