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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50732199
Protein type: Transmembrane
Type Confidence: 0.80
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEEEALNSI MKDLAALGKC GGLLDNNRNK NCVYSSKQQR NVRIKFEYEG EKRIIQFPRP  60
   61 VKFKEVVQKV TDAFGQTMDL VCMSNELLIP LKSQEDLDKA MEQLELSPSL KSLRILVSAP 120
  121 KKANLLQPNN SKQHEMRISR SMGDIMGSLY KDSERTRKYS TGILNRTAEI WPASGLRVNA 180
  181 SELTPSLLAL ELPCSLHTGR SSPPPGSVPE EQQQIARQGS YTSINSEGEF IPETMDQNML 240
  241 EAFISPDGSM SGSCQSLDRS VDSHWVNTAL SSLCPSLGML SALLTAHTFG SPWVLPAATD 300
  301 LSVKALRTPD EQWLSLASLQ EATGTHYFDI PICERFGKGG TFPRQYHLSQ SRKDYSDGRR 360
  361 TFPRSYFPQE NLFQLVPSSR TKSFNGDSKL STLQYEEYRP KWWNNCEKGL QVFSTSPTKA 420
  421 RNSLQAPVNW RLGKLLGRGA FGEVYLCYDA DTGRELSVKQ VPFDPDSQET SKEVNALECE 480
  481 IQLLKTLRHD RIVQYYGCLR DPEERKLSIF VEYMPGVSAV LKIVLSYREQ IWTALSWGSI 540
  541 KDQLKAYGAL TENVTRKYTR QILQGVFYLH SNMIVHRDIK GANILRDSAG NVKLGDFGAS 600
  601 KRIQTICMSG TGIKSVTGTP YWMSPEVISG EGYGRKADVW LAKCSLEAQW DLVQPLKVSH 660
  661 QLSVACTVVE MLTEKPPWAE FEAMAAIFKI ATQPTNPQLP DGVSSSCKNF LKQIFVEEKR 720
  721 KPTAEDLLRH PFRSDLSTGP SWWWPHRPPL ARPDLAGCSL VLETKHRTQP RDQRRKQTRS 780
  781 DHHRSPQRNA PGFCQARGDD PRTAEMGDPG VTRGREPVWR RQHLQRPEDV VVVHGRRTAI 840
  841 GRAKRGGFKD TTPDELLSAV MTAVLQDVRL RPEVLGDICV GNVLQPGAGA LIARVAQFLS 900
  901 GIPETVPCSS VNRQCSSGLQ AIINIAGGIR NGSYDIGMAC GVETMSLRSG NNPGDISSSM 960
  961 MENSKARDCL IPMGITSENV AEKFGISRKK QDAFALASQQ KAAKAQQMGL FKAEIVPVKT1020
 1021 TVLDNEGNQK TITVHQDEGV RPSTTLEGLA KLKPAFKENG STTAGNASQV SDGAAAVLLA1080
 1081 KRSKAMQLGL PILGVLRSFA VVGVPPDVMG IGPAYAIPVA VQKAGLTLND IDIYEINEAF1140
 1141 ASQAVYCVEK LGIPMEKVNP LGGAIALGHP LGCTGARQVV TLLNELKRRG KRAYGVVSMC1200
 1201 IGTGMGAAAV FEYPGN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle