YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GLPT1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.94
Transmembrane Helix	31	49	0.94
Non-Cytoplasmic	50	101	0.95
Transmembrane Helix	102	123	0.92
Cytoplasmic	124	132	0.83
Transmembrane Helix	133	154	0.93
Non-Cytoplasmic	155	163	0.80
Transmembrane Helix	164	189	0.82
Cytoplasmic	190	199	0.80
Transmembrane Helix	200	220	0.92
Non-Cytoplasmic	221	225	0.78
Transmembrane Helix	226	246	0.93
Cytoplasmic	247	297	0.97
Transmembrane Helix	298	322	0.84
Non-Cytoplasmic	323	342	0.92
Transmembrane Helix	343	364	0.86
Cytoplasmic	365	371	0.75
Transmembrane Helix	372	391	0.89
Non-Cytoplasmic	392	400	0.68
Transmembrane Helix	401	422	0.84
Cytoplasmic	423	438	0.80
Transmembrane Helix	439	461	0.89
Non-Cytoplasmic	462	469	0.79
Transmembrane Helix	470	492	0.90
Cytoplasmic	493	523	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSLMQSEPE MEKKPIGIRF LERIKGSKLS YSAYQAIVLI VTFLAYASYH AARKTTSIVK  60
   61 SALDPQSPDT GLNSLLLRFT SFGSSVKEEG GWAPFNGPDG TVLLGEIDVA FLAVYAFGMY 120
  121 FAGHLGDRMN LRIFLTVGMI GTGLFTSLFG VGYWGNIHSF YYFLIMQMLA GLFQSSGWPS 180
  181 VVAVVGNWFN KKKRGLIMGI WNAHTSVGNI TGSLIAAAML RYGWGWSFVV PGVIIVVIGL 240
  241 VNYAFLPVSP ENVGAERDEV LDSSSEKIGN SVNEPLLLSS SDSETDDKKR AVGFIEAWRI 300
  301 PGVAPFALCL FFAKLVAYTF LYWLPFYVSH TAIEGEYLSD ETAGNLSTMF DVGGVVGGIM 360
  361 AGYISDRIGA RAITAASFMY CSIPALFFYR SYGHVSLLAN ASLMFLTGML VNGPYALITT 420
  421 AVSADLGTHS SLKGNSRALA TVTAIIDGTG SVGAAVGPLL TGYISSRGSW TAVFTMLMGA 480
  481 AFVAGLLLTR LVMAEVAEKI AESRPSEECR SPVDYVQDHV MEV