YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50731377
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPGTTATCC VGTSRPHAPH TPNTRFYDSS GRSPPEPPAL LARQSSSRPH PGSLCPPHPP  60
   61 ARSPRGLLAI FPAAPRRLHG NQGGDERNYN SQHAPRFPPP PACSQSAAAT SRGRGGAEGG 120
  121 EKMAAKGGRN GLLDKWKIDD KPVKIDKWDG SAVKNSLDDS AKKVLLEKYK YVENFRLIDG 180
  181 RLIICTISCL FAIVALIWDY LHPFPESKPV LAFCVVSYFV MMGILTIYTS YKEKSIFLVA 240
  241 HRKDPAGMDP DDVWQLSSSL KRFDDKYTLK LTFISGKTKQ QREAEFTRSI AKFFDANGTL 300
  301 VMEAYEPEVS KLHDSLALER KTKAVGRSGV LQLPRRCVSD CVFLSRCTMG PAGKTAFFKA 360
  361 LLCFRFQ

Type	Start	End	Confidence
Cytoplasmic	1	179	0.98
Transmembrane Helix	180	201	0.90
Non-Cytoplasmic	202	208	0.88
Transmembrane Helix	209	231	0.91
Cytoplasmic	232	367	0.97