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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50731177
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMNMGPWSG TRPPPPCLAL LLAELLASLF QVAHGATPLG FHFTHSTYNA TVYENSAART  60
   61 YVNSQTRMGI TLSDLSWDIK YRIVSGDDEG FFKAEEVVIA DFCFLRIRTK GGNSAILNRE 120
  121 IQDNYLLVVK GSVRGEDLEA WTKVNIQVLD MNDLRPLFSP TTYSVTIAES TPLRTSIAQV 180
  181 TATDADIGSN GEFYYYFKSK VDLFSVHPTS GVISLSGRLN YDEKNRYDLE ILAVDRGMKL 240
  241 YGNNGVSSTA KLYVHIERIN EHAPTISVVT HIPFPSDKEP TYAVVNIDDL DEGANGEIES 300
  301 VSIVAGDPLE QFFLIKEGKW MNEYKIKERK PIDWDSFPYG YNLTLQAKDK GSPQKFSAVK 360
  361 LVHIASPKKE SIPLKFEKEA YDVSVSEFSP PGVVVAVVKL MPEPLGVEYR ISPSEGAENF 420
  421 KINPITGLIT TARSLKIIEK DLYELEVYTN KGDDLKAQVT IRLEDANDHT PEFQQTSYSS 480
  481 FVNESVPVGF SVLAVSAVDK DRGENGYITY SIASLNSLPF IINQFTGVIS TSEELDFESS 540
  541 PESYRFIVRA SDWGSPYRHE SEVNVTIYIG NVNDNKPLFE KVACQGVISS DFPVGGHITA 600
  601 VSAIDIDELE LVKYKIISGN ELGIFYLNPD SGVLQLKKSL INSGIKNSNF GLKITATDGE 660
  661 NFADAMFVNI SVVHGKVSSK TFSCRETRVA QRLAEKLLKK AKANVKLNLE DGFLDYYSVN 720
  721 RQAPHFDKTF PTDVMVSEDL PVGATILRIK AYDADSGFNG KVVYTISDGN ADSCFNIDIE 780
  781 TGVLKVLMPL DREKTDLYIL NITIYDLGNP QKSAWRLLTV TVGDANDNKP IFLQDSYSVN 840
  841 ILESTSLGTE IIQVEARDKD LGSNGEVTYS VLTDTQQFAI NSSTGVVYVA DQLDRETKAN 900
  901 YTLKIEARDK AESGHQQFSV VPLKVFLDDV NDCSPAFIPS SYNVKVLEDL PVGTVIAWLE 960
  961 THDPDLGLGG QVRYSLVNDY NGRFEIDKAS GAIRLSKELD YEKQQFYNLT VRAKDKGRPV1020
 1021 SLSSVSFVEV EVVDVNENLY TPYFPDFAVI GSVKENSRIG TSVLQVVARD EDSGRDGEIQ1080
 1081 YSIRDGSGLG RFSIDEETGE FLTITDFGYQ PDTESHLIEK HRFVDTGRVP VTSPSQIGAK1140
 1141 SCVLGWRGGP ASTSSTWQQR QMQPDGRLSS PEAADNPQQL QCTPVLQEFN KETGYSALLK1200
 1201 EVPKVVQGVG QAEGLLLRAQ GVLFCALWNN RLVDLVRDPC GAVSPNLQSQ LEAWLLVSAG1260
 1261 RCSSGRTWLL FSSSMLVEQV VSPNLQSQLE AWLLVSTERC SSGRTWFLFS SSILVVPVVR1320
 1321 PNLQSQLEET ELRAKGDAEL QHCWHQNDLC DCCFSTLLAL LRNEVTRKSY ATRPQQFEGL1380
 1381 MWSDHKALSC GLFAVSDPDV ASCDTAVFQN LDSRRTLGFN PMFVFGVGEL GARSNACDAQ1440
 1441 ARIRDHLLGF VFKHGVTIKP QRYVALINSS VDVLVTILAG YDIQDNCPQH AQSAWNWCSG1500
 1501 PLCVFVTLKL FSPLAYILNL SSLEVTKAVA APSIMRPAHR ACQMCKANKQ GVKRDCIGQM1560
 1561 DCEECDGERT RGTTGLIDGW FISEAELRYP KANPWRAPGS VLQLRHQNCR HYSFHAILMK1620
 1621 KQFEWEHQEL EPDSQELTAS LLLRDFLSHD GSGVIYTADV LDRETTKSYW LTVYATDHGV1680
 1681 VPLYATIEVY IEVEDVNDNA PLTSEPIYYP SVMENSPKDV SVIQIQAQDP DSSTNEKLAY1740
 1741 RITSGNPQNF FVINPKTGLI TTTSRKLDRE QQAEHFLEVT VSDGGTSPKQ SSVWVVVQVL1800
 1801 DENDNKPQFP EKVYQIKLPE RDRKKRGEPI YRAFAFDKDE GPNAEISYSI VDGNDDGKFF1860
 1861 IDPKTGMVSS RKQFTAGSYD ILTIKAVDNG RPQKSSTARL HIEWIKKPTP SPVPLTFDEP1920
 1921 FYNFTVMESD KVTEIVGVVS VQPSNIPLWF DIVGGNYDSS FDAEKGVGTI VIAKPLDAEQ1980
 1981 RSIYNMTVEV TDGTNVATTQ VFIKVLDNND NGPEFSQPSY DVTISEDILP DTEILQIEAI2040
 2041 DRDEKHKLSY TIHSSIDAIS MRKFRIDPSA GVLYTAERLD HEAQDKHILN VMVRDQEFPY2100
 2101 RRNLARVIIN VEDSNDHSPY FTSPLYEASV YESAAVGSAV LQVTALDKDK GENAELVYTI2160
 2161 EAGNTGNTFK IEPVLGIITL LKEPDLTTMG QFVLSVKVAD QGSPPLSATA IVRISVTMAD2220
 2221 NSHPKFTLKE YQAEVNENVD IGTSVISLSA ISQSTLVYEI KDGNVDGLFT INPYSGVITS2280
 2281 QKALDYEHAS FYQLTVQATN MAGMASNATV NIQIVDENDN PPVFLFSQYS GSISEAAPIN2340
 2341 SIVRSTNNSP LVIRATDADS NQNALLVYQI VESTAKKYFT VDSSTGAIRT IANLDHETIA2400
 2401 HFHFHVHVRD SGNPQLTAES PVEVTIEVTD VNDNPPVFSQ AVFETVLLLP TYVGVEVLKV2460
 2461 KATDPDSEIP PELTYSLIEG NMDHFLIDSN TGVLTIKNNS LSKDHYMLIV RVSDGKFYST2520
 2521 AMVTIMVKEA MDSGLHFTQN FYSTSISENT TNITKIAVVN AVGNRLNEPL KYSILNPGNK2580
 2581 FKIKSTSGVI QTTGISFDRE EQELYELVVE ASRELDHLRV ARVVVRVYIE DINDNAPVFV2640
 2641 GLPYYAAVQV DAEPGTLIYR VTAIDKDKDE NGDVSYLLKE DYGHFEIDRG TGSVTLKEAF2700
 2701 NSDLSNIEYL VVILAKDGGN PSLSASVELP ITIVNKAMPV FDKPFYTASV NEDVEIHTPI2760
 2761 LSINATSPEG QGIIYIIVEG DPHNQFNIDF DTGVLSVISP LDYEINSLFK LMVRASDALT2820
 2821 GARAEVTVDL VINDVNDNPP VFDQSAYNAT LSEASLIGTP VLQVVATDAD SDNNKIVQYQ2880
 2881 IVQDTFNSTD YFHIDSTSGL ILTARMLDHE LIQQCSLKVR ATDNGFPPLS SEVLVSISIT2940
 2941 DMNDNPPVFN QLIYESYVSE LAPRGHFVTC VQASDADSSD FDRLEYSILS GNDRTSFIMD3000
 3001 SKSGVITLSN HRKQRMEPMY SLNVSVSDGL FTSTAQVHIQ ILGANLYSPV FSQSVYVAEV3060
 3061 RENAAPGTKV LHVKATDGDS GVYGQISYSI INDFAKDRFL IDSNGQILTT ERLDRENLLE3120
 3121 SDIGIFLRAL DGGGRTTFCT VRVIVVDEND NAPQFMTVEY RASVKADVGK GYLVTQVQAV3180
 3181 DPDDGANSRI TYSLYSEASV SVADLLEIDP DNGWMVTKGS FNQLKNTVLS FFVKAVDGGI3240
 3241 PVKHSLIPVY IHVLPPETIL PSFSQPQYSF TLAEDTLIGS TIDIVHIVPN QGALYSTVNG3300
 3301 ELTENNKDGI FIIEQDTGLI KLDKRLDHET NSAFHFKVAA TIQLDKVDIV LTVDVEVKVL3360
 3361 DVNDNKPMFE TASYDAIIME GMPIGTKLMQ VKAVDADSSA NGQVTYTLAV ESELEKITEA3420
 3421 FTIDSNSGWI STLKDLDHEK DPTFTFAVVA SDLGETLSLS STTLVSVAVT DINDNAPVFE3480
 3481 HEVYRGSVKE SDPPGEVVAV LSTWDEDTSD VNRQVSYHIT GGNPKGKFAL GLVQNEWKVY3540
 3541 VKRPLDREEQ DVYYLNITAT DGLFVTQAAV EVTVTDVNDN SPVCEQVAYT ALFPEDIPSN3600
 3601 KVILKISAKD ADIGSNGDIR YSLYGPGNNK FFLDPENGEL KSLAPLDREK IPVYNLVARA3660
 3661 TDGGGRFCQS EIHLILEDVN DNPPVFSSDH YTACVYENTA TKALLTRVQA TDPDVESGIK3720
 3721 VLVSTAQEEI APLGGSLIDC FQKHVCVISE SKFQLYQLLK EFGELSLLEL GIWGTEPGEL3780
 3781 ATQPGLVKNY KLPENLPYYG SLPSSPLQGC HCHRLVDNSF FVDGSPKHSR ILDLSRNNCL3840
 3841 LHLCLLLVLF PVMCREGVNR KVTYSLADSA DGYFSVDRSS GIIILEHPLD RELQSSYNIS3900
 3901 VKASDQSIVL TLSSFATVTI TVLDINDNPP VFERRDYLVT VPEDTSPGTE VLSVFATSQD3960
 3961 IGTNAEITYL IRSGNEKGKF NINSKTGAIS ISESLDYESC KDFYLVVEAK DGGTPALSAV4020
 4021 TTVNVNVTDV NDNAPKFSQV VYSAVISEDA AIGDSVIMLI AEDLDSPSNG QIHFSIVSGD4080
 4081 QDNEFSVDPG SGLVKVKKKL DRERISGYSL VIQARDSGTP PLSSSVTVNV DISDVNDNSP4140
 4141 VFTPANYTAV IQENKPVGTS ILQLVVTDKD SFHNGPPFTF TILTGNEEEE FTLDPNGVLR4200
 4201 SAVIFKHMVA TEYVLCVQAK DSGKPQQVSH TYIQVRVIEE SIHKPTAIPL EIFIVTMEDD4260
 4261 FPGGVIGKIH ATDQDVYDVL TYTLKSEQKS LFKVNNHDGK IIALGGLDNG KYILNVSVSD4320
 4321 GRFQVPIDVV VQVEQLLQEM LQNTVTIRFD NVSPEDFVGL HMHGFRRTLR NAVLSQKQDS4380
 4381 LHIISIQPVA GSNQLDMLFA VQMHSGGFYK PAFLIQKLTN ARRHLENVIR ISAILEKNCS4440
 4441 GLDCQEQHCE QSLSIDSHSL MTYSTARISF VCPRFYRNVR CMCNGGLCPG SNDPCLEKPC4500
 4501 PGDMQCVGYE ANRRPFICQC PPGKLGECSG AHHSGKGGCH TSLSFAGNSY IKYRVSENSK4560
 4561 KEEFKLALRL RTLQSNGIIM YTRANPCIIL KIVDGKLWFQ LDCGTGPGIL GISGRAVNDG4620
 4621 SWHSVFLELN RNFTSLSLDD SYVERRKAPL YFQTLSTDSS VYFGAQVQVD NVRSLTDKRT4680
 4681 TQVLSGFQGC LDSVVLNNNE LPLQNKRSSF AEVVGLTELK LGCVLYPDAC ERHPCQNGGT4740
 4741 CTSVPSGGYQ CNCLSQFTGR NCESEITACF PNPCRNGGSC DPIGNAFICN CKNGLTGVTC4800
 4801 EEDINECERE ECENGGSCVN VFGSFLCNCT PGYVGQYCGL RPVVVPNIQA GHSYVGKEEL4860
 4861 IGIAVVLFVI FVLIVLFIIF RKKVFRKNYS RNNITLVQDP ATAALLNKSN GIQFKNIRNS4920
 4921 GDSRNIYQEV GPPQVPVRPM AYTPCFQSDS RNNLDKIVDG LGVEHQEMTT FHPESPRILT4980
 4981 ARRGVVVCSV APNLPAVSPC RSDCDSIRKS TWDAGTESKG VDDAEEVTCF AGSNKGSNSE5040
 5041 VQSLSSFQSD SGDDNAYHWD TSDWMPSARL SDIEEVPNFE AADGGSAHHG STRELETDYY5100
 5101 LGGYDIDSDY PPPHEEEFLS QDQLPPPLPE DYPDQYETLP PSQPVSMANT LSPDCRRRPH5160
 5161 FHPSQYLPPH QFPHETDTTG AQTGNEFSTF AVGPSQNTEN VSAGKMPLTL HNSLDASSSD5220
 5221 VSASCGFDDS EVAMSDFESV EELKLENVHI PFVETQHQTQ V

YRC Informatics Platform - Version 3.0
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