YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50730617
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.99
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	288	0.99
Transmembrane Helix	289	311	0.91
Cytoplasmic	312	352	0.95
Transmembrane Helix	353	376	0.91
Non-Cytoplasmic	377	384	0.79
Transmembrane Helix	385	407	0.91
Cytoplasmic	408	421	0.86
Transmembrane Helix	422	444	0.89
Non-Cytoplasmic	445	456	0.77
Transmembrane Helix	457	481	0.86
Cytoplasmic	482	508	0.95
Transmembrane Helix	509	530	0.90
Non-Cytoplasmic	531	543	0.76
Transmembrane Helix	544	567	0.91
Cytoplasmic	568	577	0.82
Transmembrane Helix	578	600	0.88
Non-Cytoplasmic	601	616	0.89
Transmembrane Helix	617	641	0.89
Cytoplasmic	642	651	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALRPLLIAA ALAVTAPPPP AAGFYLPGLA PVNFCEPSKE KPECKSGIEL FVNRLDSVES  60
   61 VLPYEYTAFD FCQAEGKKRP SENLGQVLFG ERIEPSPYRF TFNKKETCKA VCTKTYDTKK 120
  121 PEDKQKLDFL KKSMLLNYQH HWIVDNMPVT WCYDVEDGQR FCNPGFPIGC YITEDGRPKD 180
  181 ACVINSEFHE KDTFYIFNHV DIKIYYHVVE NEALGARLVA AKLEPKSYKH THPDNPDCSG 240
  241 VPMDISNKAN GEVKIAYTYS VSFQEEKNIR WASRWDYILE SMPHTHIQWF SIMNSLVIVL 300
  301 FLSGMVAMIM LRTLHKDIAR YNQMDSTEDA QEEFGWKLVH GDIFRPPRKG MLLSVFLGSG 360
  361 TQILIMTFVT LFFACLGFLS PANRGALMTC AVVLWVLLGT PAGYVAARFY KSFGGEKWKT 420
  421 NVLLTSFLCP GIVFADFFIM NLILWGEGSS AAIPFGTLVA ILALWFCISV PLTFIGAYFG 480
  481 FKKNAIEHPV RTNQIPRQIP EQSFYTKPLP GIIMGGILPF GCIFIQLFFI LNSIWSHQMY 540
  541 YMFGFLFLVF IILVITCSEA TILLCYFHLC AEDYHWQWRS FLTSGFTAVY FLIYAIHYFF 600
  601 SKLQITGTAS TILYFGYTMI MVLIFFLFTG TIGFFACFWF VTKIYSVVKV D