YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ABHDD_CHICK
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKSRMLWTF VERWLLALAS WSWGLCRISL LPLIVTFHLY GGIILLLLIF VSIAGILYKF  60
   61 QDMLLYFPEQ PSSSRLYVPM PTGIPHENIF IKTKDGVLLN LILLRYTGDN AAYSPTIIYF 120
  121 HGNAGNIGHR LPNALLMLVN LKVNLILVDY RGYGKSEGEA SEEGLYIDSE AVLDYVMTRS 180
  181 DLDKTKIFLF GRSLGGAVAI HLASENSHRI SAIMVENTFL SIPHMASTLF SFFPMRYLPL 240
  241 WCYKNKFLSY RKISQCRMPS LFISGLSDQL IPPVMMKQLY ELSPARTKRL AIFPDGTHND 300
  301 TWQCQGYFTA LEQFIKEVIK SHSSEEMAKT SSNVTII

Type	Start	End	Confidence
Cytoplasmic	1	9	0.95
Transmembrane Helix	10	31	0.86
Non-Cytoplasmic	32	37	0.67
Transmembrane Helix	38	58	0.92
Cytoplasmic	59	187	0.95
Transmembrane Helix	188	204	0.75
Non-Cytoplasmic	205	219	0.67
Transmembrane Helix	220	240	0.69
Cytoplasmic	241	337	0.79