YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23092548\|gb\|A...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKLVLVLN CGSSSLKFAI IDPTNGEEYL SGLAECFNLP EARIKWKMDG AKHEAALGAG  60
   61 AAHSEALNFI VNTILAEKPE LSAQIAAIGH RIVHGGEKFT ASVTINDDVI QGIKDAVPFA 120
  121 PLHNPAHLIG IEEAKKGFPH LTDKNVAVFD TAFHQTMPEE AYLYALPYNL YKEHGIRRYG 180
  181 AHGTSHFFVS RETAKMLNKP VEELNVIVCH LGNGGSISAI VNGQCVDTSM GLTPLEGLVM 240
  241 GTRSGDIDPA IIFHLHDALG MSVEQINKLL TKESGLLGLT EVTSDCRYIE DNYETKADAK 300
  301 RAMDVYCHRL AKYVGSYSAL MEGRLDAIIF TGGIGENSSL VRELVLKKLA LLGFEYDHER 360
  361 NLAARFGKSG TITTDNSRPA LVIPTNEELV IAQDAARLTA

Type	Start	End	Confidence
Signal Peptide	1	19	0.74
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	400	0.99