YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50730043
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEIRNFTWA VEDIFKETFL TYMNGWRRNM TEAANELQAK VDAENFDYVI LYLMVMIGMF  60
   61 SFIIVAILVS TVKSKRREHS KDPYHQYIVE DWGEKYKSQV LNREDLKRND IPYHLPLMPT 120
  121 GCKGTVNVLT KQLEGLWWPS GPHATDMLQL GKEHLLTGYG SRNSHSEPAQ MCRHHVQLHL 180
  181 LRLCSPPKVI GSFHCWLCSN PGCTRTAVTM KWRRAPELTV PLGHVGNALV SDPAPTLTRK 240
  241 PATKIASRDT GQEKGLPGRA GRCWEIIWNV RGAARGIVII SVAALADASA PDCAFRSVTL 300
  301 VGAGCSLLQD RHYQPSAKMV AFNLKALENF PLLMYILAAK TLILCLAFAG VKMYQSKKIE 360
  361 EKLKREREEK LKREAEKKGD

Type	Start	End	Confidence
Non-Cytoplasmic	1	48	0.88
Transmembrane Helix	49	71	0.93
Cytoplasmic	72	271	0.88
Transmembrane Helix	272	290	0.74
Non-Cytoplasmic	291	331	0.88
Transmembrane Helix	332	354	0.84
Cytoplasmic	355	380	0.90