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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50729903
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQSSASHRV HSCSNTIEWT ECELVRSQDK ITQTRMDNME NVTVFSSQHS ASTKVFSIIM  60
   61 FLFKSIHSFC MKLQNTFQEM LNYTLKQQPA SSFLRITATT RVEQSLSCLG FSHPALRGQQ 120
  121 PSAPPSQSSL SSYYSPFVQP VLIGASKKHQ AKTKAPDPGT EGALPKCYPY ALAPANRDLF 180
  181 FKRKTPHHGN PARLAGSRSP DSGLLVSGSP AQLVGSLLRD VCVRLVQVHS VSARSNGALT 240
  241 LSMVIQHDEE VNNTSPLSLS TGGIFETVEN EPVNIEELAF KFAVTNINRN RTLMPNTTLT 300
  301 YDIQRINLFD SFEASRRACD QLALGVAALF GPSHSSSVSA VQSICNALEV PHIQTRWKHP 360
  361 TVDHKDAFYI NLYPDYAAIS RAVLDLVLYY NWKIVTVVYE DSTGLIRLQE LIKAPSRYNI 420
  421 KIKIRQLPSG NKDARPLLKE MKKGKEFYVI FDCSHETAAE ILKQETLDPV NTNLQDVILN 480
  481 ELGYTGSHEL RAGFIAVRKV DLYYIILSMG MMTEYYHYFF TTLDLFALDL EPYRYSGVNM 540
  541 TGFRLLNIEN PQVSSVIEKW SMERLQAPPK PETGLLDGMM TTEAALMYDA VYMVAVASQR 600
  601 ASQMTVSSLQ CHRHKPWRFG PRFMNLIKEA RWDGLTGRIT FNKTDGLRKD FDLDIISLKE 660
  661 EGTEKIGVWN SYSGLNMTDS NKDRSTNITD SLANRTLIVT TILEDPYVMY KKSDKPLYGN 720
  721 DRFEGYCLDL LKELSNILGF IYEVKLVSDG KYGAQNDKGE WNGMVKELID HKADLAVAPL 780
  781 TITYVREKVI DFSKPFMTLG ISILYRKPNG TNPGVFSFLN PLSPDIWMYV LLACLGVSCV 840
  841 LFVIARFTPY EWYNPHPCNP DSDVVENNFT LLNSFWFGVG ALMQQGSELM PKALSTRIVG 900
  901 GIWWFFTLII ISSYTANLAA FLTVERMESP IDSADDLAKQ TKIEYGAVRD GSTMTFFKKS 960
  961 KISTYEKMWA FMSSRQQTAL VKNNDEGIQR VLTTDYALLM ESTSIEYVTQ RNCNLTQIGG1020
 1021 LIDSKGYGVG TPIGSPYRDK ITIAILQLQE EGKLHMMKEK WWRGNGCPEE DSKEASALGV1080
 1081 ENIGGIFIVL AAGLVLSVFV AIGEFIYKSR KNSDIEQCKQ THPSNSTSGT TLSTELDCGK1140
 1141 LIREERGIRT QPSIHTVYNA SSQGSEEQAC QLGTNTSTFL NTIFARFSVG PWLRGLTAGF1200
 1201 EEGTAHGISH EVQGTWELKT QCDRL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle