YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22901736
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKVAEENDH RDLSNWSNVN DTNGTIHLTK DMVFNDGHRL SITVYSILFV ISTIGNSTVL  60
   61 YLLTKRRLRG PLRIDIMLMH LAIADLMVTL LLMPMEIVWA WTVQWLSTDL MCRLMSFFRV 120
  121 FGLYLSSYVM VCISLDRYFA ILKPLKRSYN RGRIMLACAW LGSVVCSIPQ AFLFHLEEHP 180
  181 AVTGYFQCVI FNSFRSDFDE KLYQAASMCS MYAFPLIMFI YCYGAIYLEI YRKSQRVLKD 240
  241 VIAERFRRSN DDVLSRAKKR TLKMTITIVI VFIICWTPYY TISMWYWLDK HSAGKINPLL 300
  301 RKALFIFAST NSCMNPLVYG LYNIRGRMNN NNPSVNNRHT SLSNRLDSSN QLMQKQLTNN 360
  361 SLLNGRGQVM AAAVSATTKL ANVVSLKGTA NGNGSAAAAG TVPITPPLTV TIAPLATDDE 420
  421 ANDDSCLSAV TIRCQDQSPI RQKCGESIEL TSVVK

Type	Start	End	Confidence
Non-Cytoplasmic	1	41	0.97
Transmembrane Helix	42	63	0.94
Cytoplasmic	64	75	0.92
Transmembrane Helix	76	100	0.84
Non-Cytoplasmic	101	119	0.81
Transmembrane Helix	120	140	0.88
Cytoplasmic	141	153	0.90
Transmembrane Helix	154	174	0.94
Non-Cytoplasmic	175	207	0.90
Transmembrane Helix	208	227	0.90
Cytoplasmic	228	263	0.93
Transmembrane Helix	264	282	0.95
Non-Cytoplasmic	283	302	0.82
Transmembrane Helix	303	322	0.85
Cytoplasmic	323	455	0.88