YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22901732
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDEWGSFDR LPSVPSASMD LETENEVVSN WSTLANFTRL VAGAAPEIVN YTLNMIDVGV  60
   61 GMATDISNLS VSTTPLPAYA ISNSSSLAHT NSRHEAPPMA EQVPEHVMDH APQLSRSGLL 120
  121 KVYVLAVMAL FSLLGNLLTI WNIYKTRISR RNSRHTWSAI YSLMFHLSIA DVLVTWFCII 180
  181 GEAAWCYTVQ WLANELTCKL VKLFQMFSLY LSTYVLVLIG VDRWIAVKYP MKSLNMAKRC 240
  241 HRLLGGTYIL SLVLSLPQFF IFHVARGPFV EEFYQCVTHG FYTADWQEQM YATFTLVFTF 300
  301 LLPLCILFGT YMSTFRTISS SEKMFQGSKL ANYSTAKLPT QTNRQRLIHK AKMKSLRISV 360
  361 VIIIAFLICW TPYYVMMIMF MFLNPDKRLG DDLQDAIFFF GMSNSLVNPL IYGAFHLCPG 420
  421 KGGKSSGGGG NNNAYSLNRG DSQRTPSILT AVTQVDGTGG SSRQMRAFRQ QSYYRSSSNG 480
  481 TAGPGAAPFK EQVGLLHVGP GNGTPGGSVS SGATPQLIRK GSALLARQPS CLREQEHQQR 540
  541 LLLHEKPSTL VVSYDSQRGG VGVGVASGLL DNNERVSSV

Type	Start	End	Confidence
Non-Cytoplasmic	1	121	0.88
Transmembrane Helix	122	144	0.92
Cytoplasmic	145	162	0.88
Transmembrane Helix	163	185	0.89
Non-Cytoplasmic	186	205	0.88
Transmembrane Helix	206	226	0.90
Cytoplasmic	227	242	0.92
Transmembrane Helix	243	264	0.90
Non-Cytoplasmic	265	290	0.95
Transmembrane Helix	291	315	0.88
Cytoplasmic	316	355	0.97
Transmembrane Helix	356	376	0.93
Non-Cytoplasmic	377	395	0.88
Transmembrane Helix	396	418	0.80
Cytoplasmic	419	579	0.88