YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG9918-PD, FBpp0...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAGNMSHDL GPPRDPLAIV IPVTVVYSLI FITGVVGNIS TCIVIKKNRS MHTATNYYLF  60
   61 SLAISDFLLL LSGVPQEVSY IWSKYPYVFG EYICIGRGLL AETSANATVL TITAFTVERY 120
  121 IAICHPFLGQ AMSKLSRAIR IIVLVWIMAI VTAIPQAAQF GIEHYSGVEQ CGIVRVIVKH 180
  181 SFQLSTFIFF LAPMSIILVL YLLIGVHLYR STLVEGPASV ARRQQLKSVP SDTILYRYGG 240
  241 SGTAMSFNGG GSGAGTAGLM GGSGAQLSSV RGRLNHYGTR RVLRMLVAVV VCFFLCWAPF 300
  301 HAQRLIAIYA PARGAKLRDQ HEFVYTVMTY VSGVLYYLST CINPLLYNIM SHKFREAFKA 360
  361 VLFGKKVSKG SLNSRNNIES RRLRRALTNS SQTQRFSIES AEQPKPSIMQ NPTNKPPVAA 420
  421 QYAMIGVQVN

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.94
Transmembrane Helix	18	42	0.88
Cytoplasmic	43	54	0.84
Transmembrane Helix	55	75	0.87
Non-Cytoplasmic	76	98	0.80
Transmembrane Helix	99	117	0.67
Cytoplasmic	118	137	0.66
Transmembrane Helix	138	158	0.90
Non-Cytoplasmic	159	185	0.69
Transmembrane Helix	186	209	0.85
Cytoplasmic	210	281	0.65
Transmembrane Helix	282	301	0.95
Non-Cytoplasmic	302	326	0.79
Transmembrane Helix	327	349	0.77
Cytoplasmic	350	430	0.85