YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22901728
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPTNSSGVL ATDLQLFHNE KFLLNLTQVL NISADNLTSL LQGLEPEELL PTVTPMTPLS  60
   61 LLATLSVGYA LIFIAGVLGN LITCIVISRN NFMHTATNFY LFNLAISDMI LLCSGMPQDL 120
  121 YNLWHPDNYP FSDSICILES VLSETAANAT VLTITAFTVE RYIAICHPFR QHTMSKLSRA 180
  181 VKFIFAIWIA ALLLALPQAI QFSVVMQGMG TSCTMKNDFF AHVFAVSGFL FFGGPMTAIC 240
  241 VLYVLIGVKL KRSRLLQALP RRCYDVNRGI SAQTRVIRML VAVAVAFFIC WAPFHAQRLM 300
  301 AVYGSTSGIE SQWFNDVFSI LDYTSGVLYF LSTCINPLLY NIMSHKFREA FKVTLARHFG 360
  361 LGGKNQGRGL PHTYSALRRN QTGSLRLHTT DSVRTTMTSM ATTTTGLNGS ANGSGNGTTT 420
  421 GQSVRLNRVS LDSVQMQGQN RSRQDLFDNP RRMLQTQISQ LSSVGDAHSL LEEDLQFPGE 480
  481 PLQRQPTMCS IDELTDDLAI SRSRLKLTRI TRPPGGVTGG VAGGSKTVAA GSGGVSGDES 540
  541 SGKVRKAKVK VLKSSSPFKG LRTKFNWRAR RKGSHKPHEK GATVNGGDTE ERAAF

Type	Start	End	Confidence
Non-Cytoplasmic	1	64	0.80
Transmembrane Helix	65	87	0.88
Cytoplasmic	88	98	0.73
Transmembrane Helix	99	118	0.85
Non-Cytoplasmic	119	144	0.70
Transmembrane Helix	145	164	0.73
Cytoplasmic	165	179	0.93
Transmembrane Helix	180	202	0.89
Non-Cytoplasmic	203	223	0.89
Transmembrane Helix	224	246	0.93
Cytoplasmic	247	275	0.95
Transmembrane Helix	276	296	0.93
Non-Cytoplasmic	297	319	0.93
Transmembrane Helix	320	342	0.83
Cytoplasmic	343	595	0.90