YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22901726
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQGVAITIA NDSNDDGINQ SFMAHVSPSP NQSPSIGVGI GIASSTMANP SESPEMLLLK  60
   61 NDKFLTHVAH LLNITTENLS NLLGSTNGTN ASTMAADSPV DESLTLRTAF TVCYALIFVA 120
  121 GVLGNLITCI VISRNNFMHT ATNFYLFNLA VSDLILLVSG IPQELYNLWY PDMYPFTDAM 180
  181 CIMGSVLSEM AANATVLTIT AFTVERYIAI CHPFRQHTMS KLSRAIKFIF AIWLAAFLLA 240
  241 LPQAMQFSVV YQNEGYSCTM ENDFYAHVFA VSGFIFFGGP MTAICVLYVL IGVKLKRSRL 300
  301 LQSLPRRTFD ANRGLNAQGR VIRMLVAVAV AFFLCWAPFH AQRLMAVYGL NLINIGISRD 360
  361 AFNDYFRILD YTSGVLYFLS TCINPLLYNI MSHKFREAFK ITLTRQFGLA RNHHHQQSQH 420
  421 HQHNYSALLR QNGSMRLQPA SCSVNNNALE PYGSYRVVQF RCRDANHQLS LQDSIRTTTT 480
  481 TTTINSNSMA AGNGVGGGAG GGGRRLRKQE LYGPVPGTAV PHRMLQAQVS QLSSLGDANS 540
  541 LLEAEVVDRH YASGRAKRAL LATKSGALLV TPPQSGDPSE VSQPATRLKL TRVISRRDEV 600
  601 ANASTPPFCG SHSLPDPETC QSASVAGRSS RKFPWRKRRQ KTEDPSSEGL TYGSPKSQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	109	0.74
Transmembrane Helix	110	132	0.89
Cytoplasmic	133	143	0.73
Transmembrane Helix	144	162	0.89
Non-Cytoplasmic	163	181	0.83
Transmembrane Helix	182	204	0.83
Cytoplasmic	205	224	0.87
Transmembrane Helix	225	245	0.92
Non-Cytoplasmic	246	268	0.88
Transmembrane Helix	269	291	0.93
Cytoplasmic	292	320	0.93
Transmembrane Helix	321	340	0.95
Non-Cytoplasmic	341	370	0.90
Transmembrane Helix	371	391	0.77
Cytoplasmic	392	658	0.82