YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50728992
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	139	0.70
Transmembrane Helix	140	159	0.64
Non-Cytoplasmic	160	168	0.76
Transmembrane Helix	169	191	0.86
Cytoplasmic	192	212	0.83
Transmembrane Helix	213	238	0.83
Non-Cytoplasmic	239	302	0.96
Transmembrane Helix	303	323	0.92
Cytoplasmic	324	331	0.88
Transmembrane Helix	332	354	0.85
Non-Cytoplasmic	355	384	0.84
Transmembrane Helix	385	403	0.95
Cytoplasmic	404	413	0.85
Transmembrane Helix	414	437	0.90
Non-Cytoplasmic	438	464	0.89
Transmembrane Helix	465	487	0.78
Cytoplasmic	488	517	0.85
Transmembrane Helix	518	540	0.91
Non-Cytoplasmic	541	547	0.86
Transmembrane Helix	548	572	0.91
Cytoplasmic	573	590	0.96
Transmembrane Helix	591	612	0.93
Non-Cytoplasmic	613	631	0.91
Transmembrane Helix	632	654	0.89
Cytoplasmic	655	700	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWELPHVHIP CRPHSRKFPF SQDSALTSAG LVILAHAFSC NSMANDGQRH HHVQLRRSQE  60
   61 VLGQEGGKRP AAPARASHRQ AGGKSPFALA MKSVMCGMDY SVPGAVSNGE TVPAQPSVEK 120
  121 EKEEEDETLE RGQWNNKLEY VLSVAGEIIG LGNVWRFPYL CYKNGGGAFF IPYLIFLFTC 180
  181 GIPVFFLETA LGQYTSQGGV TAWRRICPLF EGIGYASQVI VVLLNFYYIV VLAWALFYLF 240
  241 SSFTIDLPWG SCDHEWNTGN CMELQRANST LNMTSENATS PVIEFWERRV LKISDGIQHL 300
  301 GSLRWELALC LLLAWIICYF CIWKGVKSTG KVVYFTATFP YLMLVVLLIR GVSLPGASQG 360
  361 ILFYLYPDLS RLGDPQVWMD AGTQIFFSYA ICLGCLTALG SYNKYHNNCY RDCVALCFLN 420
  421 SGTSFVAGFA IFSILGFMAG EQGVPIAEVA ESGPGLAFIA YPRAVVMLPF SPLWACFFFL 480
  481 MVVLLGLDSQ FVCVESLVTA LVDMYPTIFR KKNRRETLIL LVSILSYLVG LVMLTEGGMY 540
  541 VFQLFDYYAA SGMCLLFVAI FETLCVAWVY GAERFYDNIE DMIGYRPWSI IKYCWLFITP 600
  601 AVCLATFLFS LIKYTPLTYN KKYVYPWWGD TLGWLLALSS MVCIPLWIIY KLSTIKGSLR 660
  661 ERFRQLTCPL EDLPCRPGTG QPLPSTRSGL LMLTELESHC