YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50728720
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGGAFGAGK AGGAFDLQAF LRQPHTLLRL LSWVFSIVVF GSIVNEGYVN RLDESEEHCI  60
   61 FNRNRNACNY GITVGVLAFL SCLLYLALDA YFPQISSVKD RKKAVLSDIG VSAFWAFLWF 120
  121 VGFCFLTNQW QASKEEDNPM NEGGDAARAA ITFSFFSIFT WVGQAFLAYQ RFLLGADSAL 180
  181 FSQDYMDPSQ DSGMPYAPYT NEEDATDAVG TYQQPPAADA FDTETQGYQT QNY

Type	Start	End	Confidence
Cytoplasmic	1	26	0.83
Transmembrane Helix	27	45	0.87
Non-Cytoplasmic	46	69	0.74
Transmembrane Helix	70	92	0.87
Cytoplasmic	93	103	0.80
Transmembrane Helix	104	127	0.83
Non-Cytoplasmic	128	145	0.77
Transmembrane Helix	146	168	0.85
Cytoplasmic	169	233	0.81