YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50728596
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTALSLARW VALKRAFGSS DSGTGDENSL LGAGVLGDRL GALGDRVLGQ LAGQQQPHGR  60
   61 LDLPRRDGRA LVVVRQARRL AGDALEDVVD ERVHDAHGLG RDARVGVHLL QHLVHVDRVA 120
  121 LLAALLALLV ALLLGLGDRL LGALLGGGCG LSRLGHSGTT RSRSDANKND QETLNGNETV 180
  181 SGPRRQPISA EARSQSESVA ELRRLRAAFL ARLLSECSVA AMSGRGKQGG KARAKAKSRS 240
  241 SRAGLQFPVG RVHRLLRKGN YAERVGAGAP VYLAAVLEYL TAEILELAGN AARDNKKTRI 300
  301 IPRHLQLAIR NDEELNKLLG KVTIAQGGVL PNIQAVLLPK KTDSHKAKAK

Type	Start	End	Confidence
Cytoplasmic	1	113	0.61
Transmembrane Helix	114	136	0.63
Non-Cytoplasmic	137	350	0.62