YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50728312
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	134	0.94
Transmembrane Helix	135	157	0.88
Non-Cytoplasmic	158	166	0.76
Transmembrane Helix	167	188	0.88
Cytoplasmic	189	195	0.78
Transmembrane Helix	196	216	0.90
Non-Cytoplasmic	217	223	0.74
Transmembrane Helix	224	243	0.73
Cytoplasmic	244	250	0.61
Transmembrane Helix	251	268	0.71
Non-Cytoplasmic	269	273	0.74
Transmembrane Helix	274	294	0.92
Cytoplasmic	295	307	0.83
Transmembrane Helix	308	327	0.93
Non-Cytoplasmic	328	341	0.71
Transmembrane Helix	342	366	0.86
Cytoplasmic	367	376	0.68
Transmembrane Helix	377	393	0.89
Non-Cytoplasmic	394	400	0.66
Transmembrane Helix	401	419	0.90
Cytoplasmic	420	434	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRGRQKQWA EGNIEGRRPT PVHLCLLTTA PPARGGAPAT GARCRGRNPA ALVADRRRPS  60
   61 SRSPGGRSRA LSPALSPAAP AGRRAATCRG AGSVAVRPLR AAAARGREAL PPRGARRAVP 120
  121 CRTGGMGWMP AQGRLAAGLL VNLAASICIV FLNKWLYVRL GFPNLSLTLV HFAITWLGLY 180
  181 LCQALGAFAP KSLRAAQVLP LALSFCGFVV FTNLSLQSNT IGTYQLAKAM TTPVIVLIQS 240
  241 LAYGKSFPLR IKLTLVPITL GVFLNSYYDV KFNVLGTVFA TLGVLVTSLY QVWVGAKQHE 300
  301 LQVNSMQLLY YQAPMSSAML LFIIPFFEPV FGEGGIFGPW TLSAVIMVLL SGVIAFMVNL 360
  361 SIYWIIGNTS PVTYNMFGHF KFCITLLGGC LLFKDPLSVN QGLGILCTLF GILAYTHFKL 420
  421 SEQENSKSKL VQRP