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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50728073
Protein type: Transmembrane
Type Confidence: 0.95
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFEIHLCCT QNFQCFREDA TFDSSRKREK QQGGRSRRGA MAALERPVPS PEAFLGQPWA  60
   61 AWVREAAPPH AHGADLEETG KEGAKSREVM RLNKEGERGA GASPYLSVVV GRDGQPRGAR 120
  121 GRAGGCGGVG VVCSVLKSPF GWPFCDSADQ INGQCSWLCL YGGYIPLCLT LHSCWYCHKE 180
  181 QVSSKQLAEQ QFVVTDDAQQ LEGGFPSFCG ISARSSSHEQ LWSLLLIFHV DPLGDRAHSA 240
  241 GRCLLCGCDT MAKVLSLLKS GESQRTGSGC EAVSWTGSRR PLVPVLLDLD MHLFGHYPAH 300
  301 DDFYLVVCNI CNQVVKPQVF QSHCAAECHK QGTNSVTAPS RKSGKARWVQ KRCSKWLLGG 360
  361 CPRARRVAHE ADKISGILAF PNVLTYTALS SSSLHRCRNI HGPETFEIGL QSEINTSLQK 420
  421 AFLKQLIQLL LRYMSCIKRS KVAPGGVGVM PFLNRDKPSS TGPNPATEPH TEMKREGGKK 480
  481 PPPQVMHLQR RTGSTCTVRA MFWAQRLRSP HIQVCLLNWS CARRCSTPTE PIFGRAALSA 540
  541 RAAQPLPHPQ GSLAEGSVSQ RGAVDSCSEG LGNVGTSAPV PGRSPFGTFL AVSGSTEAEE 600
  601 RGAGLRQGAC AGPPVYSALP RAAAAGGRSG RGRSRRRACL KRSRAGCGRS AAWGCAPARC 660
  661 ANNERSCCLR TRNLTYSAMV AFAPALRSPS ADAEFRRGPC RCPSQGSALS RWLHVAPCGT 720
  721 TQCTLCCWCW HSREDEGYLR AVRAVRVSVG ITASALLCCD MDCSSVICWA STAAFHYLSR 780
  781 CGPGIAQTVC QGRGEHEGRW VWGEMAAVLR GRAAQGDRAE EVGLVTGVTS SPPAAATRGV 840
  841 TLAAGQGICP AIVLLTLLHW GASVLQVSER SQKEQASSQQ PAAPLRRESS RVPKVRVYRR 900
  901 RRIRLSWQPA PRRKWLGLRR FSPRDVLHKF ADPSRSQALR NGESRRWVGG CQGAELAFVK 960
  961 YQNETGCAVS FCGEEERLAG TASSLVRPRS GQRSAQKAAN NILTCLGFSS CVLPESSKRG1020
 1021 PEPQSLRLLV ELLVAQLCSG PAAQGFVVGT TYKLYRKTKG TSSSAPQLSR DSFLCSLLSL1080
 1081 TSGGDADCQL KLFPRLVCFP TLAVRPPAAG PALLCVPAQE RLSLQLCEGA AAVSSCSCCS1140
 1141 DVTSQRRHGS MCKPSPSPAS PACNSRTSLV QMKPKSCISG HNPVSSNSKP FKTPKDNLLT1200
 1201 SSSKQHTVFP SKVSRDKPCV PVPVVSLEKI PNLVKADGAN VKMNSATTTT ITSSSASSST1260
 1261 IPAPTLVKSG LTSKSVPPSP EKILNGKGII APSIDKKHQN GTKSSNKPYK RLSEREFDPN1320
 1321 KHCGVLDPET KKPCTRSLTC KTHSLNHRRA VPGRKKQFDI LLAEHKARSR EKEVAKDKEH1380
 1381 PPSARESYQS QPTPAQDSLS GSSVNSGQES KVTSPAKSRP PNSVLPSVSV LSSFLFLQAA1440
 1441 VPEESLAPCC ELAYSPWLCW QGLCGCCPLP QAKPSSANSI NSNSSSNHSG YVPELPLPSM1500
 1501 GGDLTSRLSS DEGEVDGAEE SEKLDCHFSG HHPRPLGFCS YGSRLMGRGY YVFDRRWDHF1560
 1561 RFALNSMVEK HLNSQMWKKI PPAADSPMPS PAAHVSTPFP ASVLQPFSNP SAVYIPSTPI1620
 1621 SSRITSSYIM TSAMLSNAAF VTTSDTNSIM SHTTAFPHVA ASLSIMDSTF KAPSAVSPVP1680
 1681 AVIPSPSHKP SKTKTSKSSK VKDLSSRSDE SSSNKKKKPQ SSSSSLSLQT SSSSSFSGSH1740
 1741 KKNCVLNTSS TLNSYQATSS YNSMSVHNTN NGTSPLSAKL EPSGRTSLSS SSTDSVKHMS1800
 1801 MVVSSIDSSN LSVPSLVHHS GDHSLGAHNA VSSLPLSFDK SEGKKRKNSS SSSKACKITK1860
 1861 MPGMNSVHRK STANLISAVP DPTSSSISRQ SAYVCLFLWG SVNAFRILKS LQQMRFSLIT1920
 1921 GNRALALLSV ILYMDNSTCE LNFAEKTASA IFSMIFWLIL PLCPMRCRAQ KTKLALACGR1980
 1981 QKHREQKTSE NPEKVA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle