YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10197654
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.29
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QTLSQLLDPT TAILIIVSLF IFIGLITRRR RSYPPGPRGW PIIGNMLMMD QLTHRGLANL  60
   61 AKKYGGLCHL RMGFLHMYAV SSPHVARQVL QVQDSIFSNR PATIAISYLT YDRADMAFAH 120
  121 YGPFWRQMRK VCVMKVFSRK RAESWASVRD EVDKMIRSVS SNVGKSINVG EQIFALTRNI 180
  181 TYRAAFGSAC EKGQDEFIRI LQEFSKLFGA FNVADFIPYF GWIDPQGISK RLVKARNDLD 240
  241 GFIDDIIDEH MKKKENQNTV DDGDVGDTDM VDDLLAFYSE EAKLVSETTD LQNSIKLTRD 300
  301 NIKAIIMDVM FGGTETVASA IEWALTELLR SPEDLKRVQQ ELAEVVGLDR RVEESDIEKL 360
  361 TFLKCTLKET LRLHPPIPLL LHETAEDTEI DGYFVPKKSR VMINAFAIGR DPKSWPDAET 420
  421 FRPSRFLEPG VADFKGSNFE FIPFGSGRKS CPGMQLGLYA LELAVAHILH CFTWKLPDGM 480
  481 KASELDMNDV FGLTAPKATR LFAVPSTRLI CAV

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.56
Transmembrane Helix	7	28	0.86
Cytoplasmic	29	66	0.54
Transmembrane Helix	67	81	0.29
Non-Cytoplasmic	82	513	0.79