YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|567104, gi\|10...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQLIVTFGA VALFVYHEGT KTFARNNMWL FWVALGVMLV TMLSMACCES VRRQTPTNFI  60
   61 FLGLFTAAQS FLMGVSATKY APKEVLMAVG ITAAVCLALT IFALQTKYDF TMMGGILIAC 120
  121 MVVFLIFGIV AIFVKGKIIT LVYASIGALL FSVYLIYDTQ LMMGGEHKYS ISPEEYIFAA 180
  181 LNLYLDIINI FMYILTIIGA SRD

Type	Start	End	Confidence
Cytoplasmic	1	27	0.82
Transmembrane Helix	28	48	0.94
Non-Cytoplasmic	49	56	0.70
Transmembrane Helix	57	77	0.90
Cytoplasmic	78	84	0.78
Transmembrane Helix	85	104	0.96
Non-Cytoplasmic	105	111	0.69
Transmembrane Helix	112	133	0.93
Cytoplasmic	134	138	0.76
Transmembrane Helix	139	157	0.95
Non-Cytoplasmic	158	176	0.80
Transmembrane Helix	177	199	0.89
Cytoplasmic	200	203	0.76