YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49645503
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDLVVTHRI RDAIVIFQSF YTKYSPESVE KEWNLAQVAW EFPSQRGVIR QTEEKMPVGG  60
   61 GNEKLGDKDE SHPGGLKESP HYSPSLSKLL QLSPESPSIS HVDLINLSKA LQKKIRGKLR 120
  121 LKPRNGVFEG SRATRTHEYG PFNLPYLLHG TSVYCPPPPE KKKKTREFLR ILETQKRLLE 180
  181 EADYQQLLVD KSAPEITTRG LNDHLVHSTD LTAPSVSQQT KELKHQITTI FNIALSVVSV 240
  241 SYAIWYWTKS SAGMGVSARA LLAIWGGLLI LVAEVVVYGR YVRKTTEARV TERKKKESKQ 300
  301 IVSTSEFRAG KATIEFQTEI PEDECLDTVD FTKGNHLNTV LGATGVQTQT QAVNRNKPIF 360
  361

Type	Start	End	Confidence
Cytoplasmic	1	226	0.92
Transmembrane Helix	227	247	0.92
Non-Cytoplasmic	248	259	0.74
Transmembrane Helix	260	279	0.93
Cytoplasmic	280	360	0.91