YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50557328, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.20
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	303	0.55
Transmembrane Helix	304	326	0.81
Non-Cytoplasmic	327	327	0.47
Transmembrane Helix	328	346	0.42
Cytoplasmic	347	354	0.67
Transmembrane Helix	355	376	0.88
Non-Cytoplasmic	377	385	0.65
Transmembrane Helix	386	405	0.89
Cytoplasmic	406	411	0.63
Transmembrane Helix	412	431	0.76
Non-Cytoplasmic	432	442	0.86
Transmembrane Helix	443	462	0.92
Cytoplasmic	463	798	0.98
Transmembrane Helix	799	816	0.91
Non-Cytoplasmic	817	824	0.69
Transmembrane Helix	825	842	0.70
Cytoplasmic	843	848	0.69
Transmembrane Helix	849	870	0.93
Non-Cytoplasmic	871	876	0.63
Transmembrane Helix	877	897	0.89
Cytoplasmic	898	902	0.69
Transmembrane Helix	903	923	0.73
Non-Cytoplasmic	924	938	0.57
Transmembrane Helix	939	963	0.86
Cytoplasmic	964	1088	0.59
Transmembrane Helix	1089	1104	0.20
Non-Cytoplasmic	1105	1246	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRGRQRREE SEDYGAEAIS NNPGLRHLTV GHAAGHSHPS SHSSSQSPTT PSFELSPPPP  60
   61 EESSSADKQV RIADEEPNLE LVNRRLAERR GRTRNESRSR SRSRRGSRSG ERVPRQRSSL 120
  121 HLGDLNVSMP ISTGSYGFRP HSPFLTPQGL SGRSRPVSRS GSPTRTPAFT PGHSRHGSRV 180
  181 NIKTVNSTPN MSRSASSARI QRIGSDYFQT LSTRMKRMDH TTAHTEDSEL LETYGLEELR 240
  241 EGYFDAIFEP ARKAEENARM VVLQMREKAQ AEANQVKSPI QLFLGMFVST YHAIRTTLLT 300
  301 KNGITVLKAF LAYFVGFLLC IIHPTARWLG PHCYFLPIAT ILHHPGRRTG SQIEITVQCI 360
  361 VGQALGMGIG ALALYVSDST TTARKGHGGL LAVAVIPTIA VVSWMRACYI RLYHGFLSMG 420
  421 IALLAMTDID VSSDFHWRSA WDFGIPYLFG MLLPVVINLL IIPSIGQGDM VTCMADALSC 480
  481 CRDCVHKMMA TEPGVGKEAQ DALNAQSIAL SDIHRNMCNE IMLTTFSKDN VRIVRNLIQT 540
  541 VIGHIRIVDL PCEIFSVNVA AAKEDAEEDY FNQHPHHAIP DMAPKIFELF QEGARDLVLS 600
  601 IMEALTLAEE FIKNIRHPPE EISLKFQKAM TNLQHKMNHL DAQYTKLIVD QQELNISRRA 660
  661 AINALFVQRL SHCGHAVFNL LRHLHGMSLE TPHWRLSLPR YPWKRALTWS NTQSLHDRGG 720
  721 KTAGHYFRVK AEVEEIFHRT FNMNTSRHIV REGEKNQKQQ MCVNAVDHSD FDAKHGDISS 780
  781 ARYKLWKILH RLQRFESKFA VKTTIAVTLL SLPGWLEGHD WYQHYDAFWA PILVLISLHP 840
  841 RAGGNAHDLI VRTVVAIIGA VFGALAAGIW QGHKASPYIM GVFCAVFMIP CLYRFTVSNH 900
  901 PRSGLMGCLS FTIVALGIYT DKLQGPKRWR DANPVTGTWT RALGILIGLW SAILISWILW 960
  961 PFVARTESRV FTADMLGHVS QCYQIVADRY LYHDLDDDPT TLAIELSQIR EARMRQGFQA1020
 1021 YRELILSTRH EPSLRGDFPI QTYLALFQSC EHVFNRIVEA RISSVYFRIY EFDETKETTA1080
 1081 HLLSYRRDAI AATIMVLFII ADCYRARRPV PRYLPSSKMA RKRLFQTIAS LETIMLDESD1140
 1141 NETHVQDHEK DAQKMASILA GSRKVGEQPV FQNPFGKTDE SGEKEKTEDD VSSPLAGPLH1200
 1201 GDSVTERKRK FWTIIHESAF ATAFTDISEE LEKIVGFSKS ALGEET