YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49651913
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MICIECTEPV SSLYTEYSTD NIRLTACSKC NKFADKYIEH DGVLIFIDLL LLKKQAYRHL  60
   61 VFNVLTPDTS PSTTNDNLHP RVRRLFLLIT LFEVYLTWAQ VEKGPQTPLT RYLLGLPIIT 120
  121 QYNYFLIICL TEAVTWHISV RVMARILLGW KRPNALSTAL LISSATKLLP ILMIIWDYDV 180
  181 PLAAALVGWA VNFNVVEALT IVLSCSYFKA ILITAMSSIA KGAVSRFIFM PILLNDCDVE 240
  241 FPSLDVSAIG QPTLFAQVFQ LIKTYAERV

Type	Start	End	Confidence
Cytoplasmic	1	81	0.92
Transmembrane Helix	82	101	0.77
Non-Cytoplasmic	102	117	0.87
Transmembrane Helix	118	140	0.81
Cytoplasmic	141	154	0.88
Transmembrane Helix	155	176	0.90
Non-Cytoplasmic	177	185	0.78
Transmembrane Helix	186	213	0.71
Cytoplasmic	214	269	0.80