YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50556798, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	52	0.99
Transmembrane Helix	53	73	0.91
Non-Cytoplasmic	74	99	0.94
Transmembrane Helix	100	120	0.93
Cytoplasmic	121	128	0.71
Transmembrane Helix	129	150	0.92
Non-Cytoplasmic	151	156	0.81
Transmembrane Helix	157	175	0.96
Cytoplasmic	176	185	0.83
Transmembrane Helix	186	206	0.95
Non-Cytoplasmic	207	216	0.68
Transmembrane Helix	217	236	0.96
Cytoplasmic	237	305	0.94
Transmembrane Helix	306	323	0.79
Non-Cytoplasmic	324	342	0.73
Transmembrane Helix	343	365	0.92
Cytoplasmic	366	372	0.91
Transmembrane Helix	373	395	0.91
Non-Cytoplasmic	396	413	0.92
Transmembrane Helix	414	434	0.91
Cytoplasmic	435	450	0.73
Transmembrane Helix	451	473	0.82
Non-Cytoplasmic	474	483	0.73
Transmembrane Helix	484	503	0.92
Cytoplasmic	504	540	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLDKNRQIT TSESSSGSSA DEGTHIMRGL TSTSTQDETT GSISEGNLEA EKISPFVFVL  60
   61 VALASISGFL FGYDTGYVSG ALVVIKEDLG RALSNGDKEL ITASTSLGAL LGGVIAGAMC 120
  121 DFFGRKWVIT FANILFLVGA AIQCGAHAVW TMIGGRFVMG WGVGIASLCA PLYISELAPT 180
  181 RIRGRLVVLN VLAITGGQLV AYGIGAGMAH VHQGWRILVG LSMVPAFVQM VIFVFMPETP 240
  241 RYLVRKNKIA EAKKVLAKTY ATDDDNLLDR KLHELMLHNA YKESGLSTMA RARNTMKELY 300
  301 CVPSNLRALI IACGLQGIQQ FCGFNSLMYF SATIFEVVGF DNATAVSIIV AGTNFVFTIV 360
  361 AFMVIDRIGR RRILLGTIWG MSLGLVVNAI AFHFLDKQKE KNPNHELDKE HISGWAYVVL 420
  421 VAQLVYVAFY ATGIGNVPWQ QSELFPISVR GVGTGMATAT NWAGSLIVSS TFLTMLENIT 480
  481 PTGTFSFYAG LCALGEVFVF FLYPETSGMD LEQIQQLLTG GFNIKESMRL SDEAKRGYKK 540
  541