YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49651162
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSFWGNSQA GVPPETANNS SWWSNIQNGI RLPTTETETM AENAGVDTQI AEPEWFKLSW  60
   61 WDRMIVFGVC LAGAVVCFAI CFLIMPVLVL KPRKFAVLWT LGSLLFVISF GVLQGPVSYV 120
  121 KHLVSKERLP FTVAFFGSIF ATLYFSLGMK NTLLTIIACV VQLVAAIWYA VSYFPFGHQT 180
  181 MRFASRVGAR QVTGWINS

Type	Start	End	Confidence
Cytoplasmic	1	64	0.88
Transmembrane Helix	65	88	0.94
Non-Cytoplasmic	89	94	0.79
Transmembrane Helix	95	117	0.91
Cytoplasmic	118	128	0.75
Transmembrane Helix	129	147	0.95
Non-Cytoplasmic	148	153	0.70
Transmembrane Helix	154	176	0.92
Cytoplasmic	177	198	0.87