YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49650982, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALITARRVI LLGLAVATVC FLFFGSSEKI APTVLLPGDM SAFENKIYKM RAETEKALKE  60
   61 QEAAAAKRFD SFNKKLSELE TENRVLEKEI QRLRTPPQGA SLREKLAYTF PYETYKKFPA 120
  121 FIWQTWKDEI TDDTPDTIRQ PIRTWTEKNP SFVHEVLTDD AAAMFVQHLY AQIPEVVEAY 180
  181 KAMPKNILRA DFFRYLVLLA RGGVYSDVDT EDLKPIPNWI PDEVSPSTVG LIVGIEADPD 240
  241 RPDWKEWYAR RIQLCQWTIQ AKPGHPVLRD IVARIVEKTL AKKRSGTLEM AGDKTDGSEI 300
  301 MDWTGPGVWT DSVFDYFNDR KKSGLKSQVG IKDFFNLKTP KHVSDVLVLP VTSFSPGVDQ 360
  361 FGAKDTDDPL AFVKHLFSGS WKPEDERMNQ NQPQVNQ

Type	Start	End	Confidence
Signal Peptide	1	27	0.95
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	397	0.99