YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50555215, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAVYTAVQP PIHGLDSSAL SGIMGCISIA CWIIVFTPQI YENFKRQSSE GLSLSFVVIW  60
   61 LIGDIFNVLG AILQKIIPTM IILAIYYTLA DILLLLQCLV YTHRNKMVDL KHLSPATPLL 120
  121 EADPSHDAEP RPAPVTEPVP RAKVIFYRLL MVATVIAAGI LGYVFSSNNH KDGKPEKPHD 180
  181 DPLEMNMLGQ FFGWLCAAFY LGSRVPQIVL NYERKSCEGI SFMFFLFACL GNLTAVASIL 240
  241 LKDTSRQYLI INASWLLGAI GTLFLDFVIF CQFWIYGE

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.90
Transmembrane Helix	18	36	0.95
Cytoplasmic	37	51	0.79
Transmembrane Helix	52	73	0.91
Non-Cytoplasmic	74	80	0.72
Transmembrane Helix	81	101	0.92
Cytoplasmic	102	143	0.97
Transmembrane Helix	144	165	0.93
Non-Cytoplasmic	166	186	0.92
Transmembrane Helix	187	208	0.82
Cytoplasmic	209	219	0.82
Transmembrane Helix	220	241	0.93
Non-Cytoplasmic	242	252	0.80
Transmembrane Helix	253	276	0.88
Cytoplasmic	277	278	0.88