YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49650777, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSDSENERP THQEPKEKSR RPPNTAFRQQ RLKAWQPIFT PKTVLPLLLC ITVIFAPLGG  60
   61 ALIYGSDQVQ EIIIDYSHCH EQASTTEPRT MDDKYITTHF NAKDATSKVQ WQLLDGTDEQ 120
  121 KSRRSYNGTC RLTFDVPHDM GAPIYMYYRL TNFYQNHRRY VTSYNEDQLN GKNKSAHDLK 180
  181 DKNDCKPLVL DRDGKPYYPC GLIANSMFND TFHTPVALNP SGNQGNVTYD MTTDGIAWGT 240
  241 DKNRFKKTTY NASQVTPPPF WVEKFPDGYT EENLPNIAEW QEFQNWMRTA ALPTFSKLVM 300
  301 RQDHNTLTVG TYSVDVDLYF PVLQYDGTKS LVLTTRSAVG GRNPFLGIAY VVVAGICAVV 360
  361 GLLFLGKHLV KPRRLGDHSY LSWNNEN

Type	Start	End	Confidence
Cytoplasmic	1	42	0.90
Transmembrane Helix	43	64	0.88
Non-Cytoplasmic	65	345	0.98
Transmembrane Helix	346	366	0.96
Cytoplasmic	367	387	0.95