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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|49650608
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.83
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSATGLLVI LLIAFALQLV AVLSVPVTKT ISLGSYQDHK FGVFGYCNVK DGTCSPAGVG  60
   61 YNLVDSDNAG FSLPSNARHT LSNLLIVHPI ATGFTLILTV LAMLAHIQGP ASSSRYLLFC 120
  121 LVFSLPTFLL VLLSFLVDIL LFVPHLDWGG WIVLAATILV AISGVVLCVM RRTLSSKKAM 180
  181 KKHQLDTTNE LSAFSSHKHL NSFTYSSKEN VPQFSELRYE TSHDTSKDEE VLPLTSHVYE 240
  241 EPGHHVGDTS YASQGTNNSR VNLLTSEEPQ APKRESPFKD QRQDRYTPDR YGPSPDRYDQ 300
  301 GGPGRPPNGS RGVPPRRPSN GPTPPGQGPS PTGAYGRNNN PNYNGGYNNR LPRPRGPPGS 360
  361 NNSSPFLGAR NGPGLTPPHN LQTATTGPMQ LPAGTYLPGE EPANSPDTYG PGVIPIPEIR 420
  421 RESKVPGASP TPPPVSGNSP PTETSESGVS RPYRGNYSRR GSEASAQTPP NAQPNPPPGG 480
  481 AQNYEYVPAR QQWNLTTEES NATAPAPGPQ PLQRNHSYDT YNPYRSETPS APGSRAQSQG 540
  541 TDDNLGTLHQ PVPTTVTPSN SGALNNKDSP WYSPPVDEQF RNSFIPDAPV SPSESISSNF 600
  601 TSVSQRGINP RYFGADGPPG GLHQGAPPPP HMRGPPPHMG MGGPNMGGHN MGGHNMGGPP 660
  661 PNMGPRPPYG GGGPGHGNKH DLLLSGNPDS QFQPQTRRKP GRGGRPGMSP ASLMGRDTGP 720
  721 YSMR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle