YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49650092, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	142	0.95
Transmembrane Helix	143	166	0.83
Non-Cytoplasmic	167	174	0.91
Transmembrane Helix	175	196	0.91
Cytoplasmic	197	205	0.82
Transmembrane Helix	206	227	0.90
Non-Cytoplasmic	228	235	0.71
Transmembrane Helix	236	257	0.92
Cytoplasmic	258	264	0.93
Transmembrane Helix	265	288	0.91
Non-Cytoplasmic	289	296	0.91
Transmembrane Helix	297	317	0.90
Cytoplasmic	318	366	0.93
Transmembrane Helix	367	391	0.85
Non-Cytoplasmic	392	406	0.83
Transmembrane Helix	407	429	0.95
Cytoplasmic	430	449	0.95
Transmembrane Helix	450	471	0.93
Non-Cytoplasmic	472	477	0.84
Transmembrane Helix	478	499	0.91
Cytoplasmic	500	510	0.86
Transmembrane Helix	511	533	0.87
Non-Cytoplasmic	534	544	0.85
Transmembrane Helix	545	569	0.89
Cytoplasmic	570	635	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIHSSSSHD KDIVQIVEDS IGLSKTDTRS SHVSRASKAS RAASDYQIDH IYGDMDRREI  60
   61 TLARQITRET ILSAYQEKVR SRASSIINGK IDPSTAPPPP LKNGGDGSQF LDVDPELVTW 120
  121 DGDEDPENPQ NWHTYKKVAT TVIVSLYTFV SPLTSSIISP AVPAIAAEYN ETRPVVQSLM 180
  181 VSIMILAWAI CPLFVAPLSE MYGRKIVMDV SILVLLAFTL GCGGAQNTAQ MAVCRFFAGV 240
  241 GGAAPLSVGA GVLADLYSPQ KRGTALAWYA IGPTVGPVVA PIAAGWIVQE TNTWRWVMWV 300
  301 DGIFIGCVAA CGFLFYSETY PPVLLQRKAK KLRKESGNDA LHTIYDIASE PLSSKLYTSM 360
  361 TRPLRILVTH PIVMGLGLFM AFTYGFMYIM IVTFPALWTE RYGFSLGIMG LTFLGMGIGF 420
  421 LAGTWFWCVY TQKVYIKLRD QNGGVPKPEF RLPCIFAAPF LECIGLIWYG WSAESHVHWI 480
  481 MPIIGTGIFS FAVMDVFQTI QTYLIDMNPR FSASYVASAS LFRSLFGFAM PLFGRQMYDA 540
  541 MGYGWANTMC GILAVVLGLP FPIIVWFYGE RIRNRFDKKL EASQAKKDEK NMEKMRKREL 600
  601 ERELKEQEKL DKEKNEHVHF VAVETSPSIK NEDSL