YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50552161, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSVYADQHR EAPFPKKAYK AELQKTTENA GLGLQVSEFL SEAEIIHSLY YRYRNAHHCA  60
   61 EWFRPFSMLH RRVSQVANWI VDLHKATKKR APRLITAIKI SIQKIQTRYL QPAFWSFYSV 120
  121 LALGQYVTVG FALLGTVARI ASLLAQVHPI PRTVGKVLDA AVKKGAEVMS DDIGEVLVRV 180
  181 TSEKPAKSDK IKKMTKSTVT KTTTGGKKLL KNMDIDDIFS TKKKTKKNIE KPRVVEENVE 240
  241 ESIITNDDIE DNSMLTEPAP KAKKVKVAKV ENFFEESKDK KKKNPASLDD SLEPPKKKKK 300
  301 ILDSTDGMKK KKKKSKKNAI DDIFG

Type	Start	End	Confidence
Cytoplasmic	1	113	0.63
Transmembrane Helix	114	138	0.66
Non-Cytoplasmic	139	325	0.85