YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50551763, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDKEKKKSS ATHAAFPPST ASQPQSMSPL LSSTPPTVTK ALAQAYPYIL ASDKVLGLLT  60
   61 WTEDDQWQSF LLVAVYVTVV MYYEYLVIYC GHILAVGFIW AFVYIRQSVE RRQTSEPSLD 120
  121 AIVHTLTNVT TKANLLLLPI TSLSLTPRDV TRLAFTTLFL SPLYMFGAYF FLGPRKFLLT 180
  181 TGVFFLTYHS MAARVTRAVI WKSKAIRLVT FYLTGLDFSN TKRNLGAFGF TQSPLSVQSK 240
  241 DGKPVRFTYV LYENQRRWLG IGWTANLLAY ERTPWTDEFL NEVTPPSEFK LPDTEGTGMK 300
  301 WQWVDPTWRL DCTNDGALVI IGNKALSTPD PSPSEGWIYY DNTWKRPTAD DSFSKYTRRR 360
  361 RWVRTAELIT VTKPTDVVVT VEEDGVTDAA GDVEIITTET EEKVRRRKGI RFEEDS

Type	Start	End	Confidence
Non-Cytoplasmic	1	84	0.61
Transmembrane Helix	85	104	0.91
Cytoplasmic	105	152	0.84
Transmembrane Helix	153	172	0.90
Non-Cytoplasmic	173	177	0.77
Transmembrane Helix	178	198	0.66
Cytoplasmic	199	416	0.71