YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPI7_YARLI
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	26	0.93
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	406	0.99
Transmembrane Helix	407	430	0.90
Cytoplasmic	431	437	0.80
Transmembrane Helix	438	456	0.92
Non-Cytoplasmic	457	461	0.81
Transmembrane Helix	462	479	0.76
Cytoplasmic	480	485	0.70
Transmembrane Helix	486	501	0.71
Non-Cytoplasmic	502	524	0.83
Transmembrane Helix	525	544	0.90
Cytoplasmic	545	554	0.83
Transmembrane Helix	555	575	0.88
Non-Cytoplasmic	576	580	0.78
Transmembrane Helix	581	599	0.48
Cytoplasmic	600	603	0.46
Transmembrane Helix	604	625	0.71
Non-Cytoplasmic	626	645	0.50
Transmembrane Helix	646	667	0.58
Cytoplasmic	668	687	0.82
Transmembrane Helix	688	709	0.81
Non-Cytoplasmic	710	730	0.79
Transmembrane Helix	731	752	0.73
Cytoplasmic	753	794	0.82
Transmembrane Helix	795	816	0.94
Non-Cytoplasmic	817	835	0.81
Transmembrane Helix	836	857	0.93
Cytoplasmic	858	860	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLWKRWTLAV TIVVLQLAAV LLFARGFLPS RVLLPGYTES RVSTEAPFQK AIIMVVDAFR  60
   61 SDFAFSDQSN CPQLHKRINS GGAIPFTAHS TPPTVTLPRI KGLTTGSTPN FLDAVLNIAE 120
  121 SDNSSTLANQ DSWLAQASRD GRKIHMFGDD TWIKLFPGMF DDCEGTASFF VSDYTEVDNN 180
  181 VTRHIDTQLD QKTEWDVLIL HYLGLDHIGH KTGPESPFMP AKQKEMDDIF DKLYNSCDDD 240
  241 TVLILLGDHG MNEVGNHGGS SAGETSAAMV FASPKFETAQ LTETAETSPL PWTDTYKYHS 300
  301 RMDQTDLVPT LTALLGLNTP KNNLGVLVSQ MLGLWSPEDQ LNVLKNNADQ MVQILQGQAS 360
  361 RESDAKEVYE LYDTLNSNPS VKDYYNFLYE AQSYLTHASS NYNTNDMLGG IGLGLLSTIL 420
  421 ALTVFSALTL AVQGLKRLYL IILLVYFISV FGSSTVEEEH QIWYWITSGW MAFLYISGSR 480
  481 NKFGDGFNWM FVQVFVRMMI SWNQTGQKFT KKDDIVTWLS KDGNHPVLWI LILVTYGVAF 540
  541 NKVWRYGFSK VESKLAFLLT LITTFASVGF KITQAWEAGE VVPAPLLYLM GLPGTLNEVN 600
  601 ARMAGLARFA FSTIAAGSLY RVLSLAGTDK VNLIRDLHAF LTLFLITQSR IQNIPLFMVY 660
  661 YFLEIFLRKA TNRSFIFSSR DIYQTEALFQ KLVLVLSVST LLLEQVSFFS MGNSNSMASI 720
  721 DLSNAYNGVT LYQIEFVGVL TFVSNWIGPL YWSTAGLSFL LEDHVRNAIF AKIAEKNNDV 780
  781 KLTTKLVQQA LTLRVYVVLA FSSVAISAVM ITCFFLREHL FIWTVFSPKL LYQFVWTVLQ 840
  841 FALVDVILSS IFVVLVYRSV