YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49648930
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	63	0.97
Transmembrane Helix	64	82	0.93
Non-Cytoplasmic	83	102	0.88
Transmembrane Helix	103	123	0.92
Cytoplasmic	124	132	0.86
Transmembrane Helix	133	154	0.93
Non-Cytoplasmic	155	162	0.69
Transmembrane Helix	163	184	0.90
Cytoplasmic	185	193	0.81
Transmembrane Helix	194	214	0.95
Non-Cytoplasmic	215	221	0.87
Transmembrane Helix	222	242	0.97
Cytoplasmic	243	259	0.91
Transmembrane Helix	260	280	0.92
Non-Cytoplasmic	281	289	0.78
Transmembrane Helix	290	312	0.93
Cytoplasmic	313	321	0.91
Transmembrane Helix	322	344	0.90
Non-Cytoplasmic	345	363	0.87
Transmembrane Helix	364	383	0.94
Cytoplasmic	384	392	0.77
Transmembrane Helix	393	413	0.91
Non-Cytoplasmic	414	419	0.90
Transmembrane Helix	420	442	0.93
Cytoplasmic	443	461	0.91
Transmembrane Helix	462	483	0.91
Non-Cytoplasmic	484	529	0.96
Transmembrane Helix	530	549	0.93
Cytoplasmic	550	673	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNLNTKSSK EPEVTEVAVD STPSSPVTRE SSPESSPDNS AVDLEKGKKS KFEMHDQTNL  60
   61 LPRSQLFLVF GAMAFCMLVS FMDQNGISVA LPDIAKDLNA TDTISWAGTS GLIANTVFQV 120
  121 LYGRLSDIFG RKLVFMIVVC TLVCADIGCA CAQTSTQLYI FRAFSGIANG GMSCLTMIVV 180
  181 SDIVTLKERG KYQGILGACV GLGNTIGPFL GAAFTENVSW RAIFYLLAPM GGLCAVVIFF 240
  241 ILPSKKPQGS AIQKAKAIDY PGLFCSSVAL VFLLVPIAGG GSYYEWDSPM VISMLCIGGV 300
  301 FFIAFFVIEG FFAKLPMMPL RIFGTKALFA LMMHSVLLGI AYYGDLYYLP MYMRNIRGWS 360
  361 SMKAAGMSCA LVTTQAVTTV ISGQYLSRMG RYLEVIYFGF GIWTVGAIMK CFWKRDSNMA 420
  421 LLIFSLLFEG AGVGCCFQPT LVAAQALSRK EDRSVVISSR NFLRSFGGAV GLAVCSAILA 480
  481 NSLKADLKTK NLPSELYELI VKAPFSLPDL SHYPEYRDQV LDAYMNGSHT VFVFLCPIVG 540
  541 ACLLVTVFVK DHGLQTHEKK AAEAKTVEDK DKDESGTDCE DMTKGEVLVS EKEGKLSRNS 600
  601 SSQSMHFGDH TAVNTPAPTG YNTPVVGTLC HNSPNFPPMD HNDVITPLED FDESPLPPHS 660
  661 PNSSGKRVTI QEE