YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LPE10_YARLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHIKISTDFA IQNLHCTTMI RPLLRLCGQR TAATPFVSFF RPPKKPLSGI SFARHYSPTK  60
   61 KPPSEVPTPT PGNYLVPITG PPGDTPRDTD LLIKSLTHKS LLPENNLVRC TVFDSDGNVT 120
  121 VASGEFKRTE LLNKHGLLPR DLRKLDTGVN SIVPTILVRD NSILINLLHI RALIKADKVL 180
  181 LFDVFGSTDS KTQSLFMYDL GHKLKKSNKT MGSLPYEMRA LEAIFISVIA ALDAEMKVHT 240
  241 TVINGILSEL EQDIDREKLR HLLIQSKKLS AFLQKATLIR DVIDELLDTD EDLAGLYLTE 300
  301 KKAGHPRAID DHSEVEMLLE TYYKHCDEIV QTVGNLVSNI RNTEEIVNII LDANRNALMH 360
  361 LDLKFQIGAL GLAGGTFIAS LYGMNLKNFI EESYWGFLGV TGVASLLTVW IIAHFLKSLR 420
  421 QVQRVTMTSD KKKAMKKKDT VAEKRRNHLR NWLTK

Type	Start	End	Confidence
Cytoplasmic	1	364	0.70
Transmembrane Helix	365	386	0.87
Non-Cytoplasmic	387	393	0.67
Transmembrane Helix	394	416	0.91
Cytoplasmic	417	455	0.72