YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49648509
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	39	0.98
Transmembrane Helix	40	61	0.93
Non-Cytoplasmic	62	71	0.77
Transmembrane Helix	72	93	0.89
Cytoplasmic	94	110	0.90
Transmembrane Helix	111	130	0.93
Non-Cytoplasmic	131	140	0.71
Transmembrane Helix	141	162	0.92
Cytoplasmic	163	296	0.75
Transmembrane Helix	297	319	0.90
Non-Cytoplasmic	320	364	0.48
Transmembrane Helix	365	385	0.71
Cytoplasmic	386	393	0.54
Transmembrane Helix	394	416	0.87
Non-Cytoplasmic	417	449	0.59
Transmembrane Helix	450	472	0.88
Cytoplasmic	473	482	0.80
Transmembrane Helix	483	504	0.86
Non-Cytoplasmic	505	510	0.73
Transmembrane Helix	511	534	0.88
Cytoplasmic	535	543	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLNWKKIKP ISPKQAVRNT PDVVMGVSDG LYRILRSKHL WLNYCLIPIG TIAMLAVSYA  60
   61 TNLLFQLKPV EFPASVMVLA VLFTGIMVTE RIFGSKVSDF LMHYFNIPGR FLLKWLAVCF 120
  121 SGAFITLPLS EHVTVGQAWS MGLIFIIGLA FYLGLCAYMA LAVDWFVKLF HKEKINDEEK 180
  181 QVETSFDQIE EHSGETDTAT STDLENGEPM VDNIVMNPTE ADKVEEEEKL EPEVPLTVFE 240
  241 KSSNFVYDNF DDIFYFTLFW CGLIVYYARG YAMIMHTAMV AFVFRQVNKL PPKLKRYLSP 300
  301 VIVTAGICML IILITSLIGN HHKPRDFMND LRHFKTGRNY LYLVNNYRHW NEVNTNGMYH 360
  361 RLPGAGDVYS SFMDAGIIAM LVPLYEYRAE LIEHWIMLIV PIGSGAIHFF CYPAICYRLW 420
  421 LTSEQALGFA ARSATLALAT PVTEGLGGNI QVTAVTGVLS GIVGVLIGDF LLEKVYRVPM 480
  481 DNFMVVGITY GTNSSAVAAT TLLATDRRTG AIASLSFVLF GITLVVLTAI PPVANVAKHL 540
  541 AGK