YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49648401
Protein type:	Globular with Signal Peptide
Type Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFSHALLAA LVALASAQSS ATTSASSSQQ SGCSQDIKVQ SQSDLDKIAG CKKLDGSIEI  60
   61 TGEAGVLSID GIEEITGSLK ANNLSTLNSL TAPKLTSVGK DLDLQVLNGL STLSFPALQA 120
  121 VGNLKWITLP NLDVMQLNQG VNNATSVVIS DTSIKELMGI NVVDVGEVNI NNNRYLKQIA 180
  181 LGLQHVTESL QISDNAPGLE AQFDSLQWAA NISFRGVSKA DMPNLTYVNN SIGYVNNTIK 240
  241 NISLPQLTKV GGGIFFVSNS ELTDLKVPEL EEIGGGLQVA NNTKLRKVDG FPKVKSVAGA 300
  301 IEMLGNFSEA TLPKLNQVKG GVDVESNDSG FNCSSWNDAH SNGDIQGDSY QCSAKESQTS 360
  361 VALSATSGSG SASSSATGSA GSSGSAGTSA GSSAQASGSS AKKDGDKKNS ANTLRGAEIV 420
  421 AGFGAGAAIL IHLL

Type	Start	End	Confidence
Signal Peptide	1	25	0.95
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	434	0.98